PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0500.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 328aa    MW: 37292.9 Da    PI: 4.961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.6e-5661331128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtdeelv +yL +k++g+ +el e+i+evd+yk+ePwdLp k  + ++++ewyf+s+rdkky++g+r+nrat++gyWka
  SapurV1A.0149s0500.1.p   6 LPPGFRFHPTDEELVAYYLDRKINGHAIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDQEWYFYSPRDKKYPNGSRTNRATRDGYWKA 91 
                             79****************************.99**************96445667999***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd++v+s ++++ g+kktLv+y+grap+g +t+Wvmheyrl
  SapurV1A.0149s0500.1.p  92 TGKDRAVHS-HKRAAGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                             *********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-633157IPR003441NAC domain
PROSITE profilePS5100559.7836157IPR003441NAC domain
PfamPF023651.0E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKING HAIELEIIPE VDLYKCEPWD LPDKSFLPSK  60
DQEWYFYSPR DKKYPNGSRT NRATRDGYWK ATGKDRAVHS HKRAAGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIDSFCGA ASSILKDSYA LCRVFRKTIQ IPRTREEKNV GDEEKDAAGV  180
SEDQLLGDNT SGIHEISKGR EAEGENFNDY CKFLSETSSS DVTQAPVASD EANSSANICS  240
MGVDFSSNLI QDMQMPIFYS SLLHQFPYPP LELEDFPQIS IAECMKPSKP EISSEYMMYK  300
DCMDGTLEEL CSSRENSSIN VLPMQDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57115712165NO APICAL MERISTEM PROTEIN
1ut4_B3e-57115712165NO APICAL MERISTEM PROTEIN
1ut7_A3e-57115712165NO APICAL MERISTEM PROTEIN
1ut7_B3e-57115712165NO APICAL MERISTEM PROTEIN
3swm_A2e-57115715168NAC domain-containing protein 19
3swm_B2e-57115715168NAC domain-containing protein 19
3swm_C2e-57115715168NAC domain-containing protein 19
3swm_D2e-57115715168NAC domain-containing protein 19
3swp_A2e-57115715168NAC domain-containing protein 19
3swp_B2e-57115715168NAC domain-containing protein 19
3swp_C2e-57115715168NAC domain-containing protein 19
3swp_D2e-57115715168NAC domain-containing protein 19
4dul_A3e-57115712165NAC domain-containing protein 19
4dul_B3e-57115712165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0149s0500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013575.10.0PREDICTED: NAC domain-containing protein 74-like
SwissprotQ9FFI52e-88NAC86_ARATH; NAC domain-containing protein 86
TrEMBLB9HI290.0B9HI29_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-112NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]