PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0151s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 372aa    MW: 40178.3 Da    PI: 7.1373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0151s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-0893118127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +kt+lC+ f++ GtC+y ++C+FaH++
  SapurV1A.0151s0220.1.p  93 FKTKLCCKFRA-GTCPYISNCNFAHSM 118
                             69*********.*************95 PP
2zf-CCCH18.53.6e-06165190126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             yk + C+ f+    C+yGd+C+F H+
  SapurV1A.0151s0220.1.p 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                             77888********************7 PP
3zf-CCCH42.97.9e-14251276126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt++C+ +  tG+C++G++C+FaHg
  SapurV1A.0151s0220.1.p 251 WKTRICNKWELTGYCPFGNKCHFAHG 276
                             8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.79E-890123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-1490125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.06592119IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-492118IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-9162192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7163192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23164192IPR000571Zinc finger, CCCH-type
SMARTSM003560.058164191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-17246280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-10247281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.981250278IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-9250277IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11251276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDYNRDFSGG NAVHIFPILG PENWIPNSSD SNSVWATEDD YREWHNFDVL NDNASSNSNY  60
QSSTRSGSEL PNKKSKNNSQ ELNSKKSIGK MFFKTKLCCK FRAGTCPYIS NCNFAHSMEE  120
LRRPPPNWQE IVASHEEEKG NTVDVIEEFQ IPSIVGFGAE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GSGAGIGVLG GGGGGGGGGG GGGGGGGNAA  240
SNAVNMKPSN WKTRICNKWE LTGYCPFGNK CHFAHGVGEL HRYGGGLVDT EAKDSSSVPV  300
ESKQGGMPSK TPPETVVASV TSVPHSDVYH LGVSSQRSSI LIHRPGQRTH QKWKGPDRIS  360
RIYGDWIDDI E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0151s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304341.20.0zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-128C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLB9GZ920.0B9GZ92_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-127C3H family protein