PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0152s0090.14.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1092aa MW: 119492 Da PI: 4.6378

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0152s0090.14.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.7e-10	935	977	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k SapurV1A.0152s0090.14.p 935 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 977 59*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.5E-27	927	1009	No hit	No description
PROSITE profile	PS51293	10.733	932	983	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	4.8E-6	932	977	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-7	933	981	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.17E-10	935	984	IPR009057	Homeodomain-like
CDD	cd00167	1.85E-6	936	977	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence Send to blast
MLFLSVARSA GKFQPKAKPR PKKVEFVPIP SIPPSKAKEK AVAASQTSLD TAISVQPVGI 60 MDEKLTGQIG SLSPSAPTGT KEPLKSNDGK TKLVEESGSP LATSDMVGVK EPQKYKEGLP 120 SWEIGSLEAA NLTPVRGNDA GSVGAVDSEA DCNGNQKYNF VKSAGAAGSL GFDSDLLDDI 180 IPKSLKTRAG GKFKPKVKPW QRNENPEPVS SSPSKCAEEE PKAHSQKTQS TEPVYVANTR 240 MNPIGRTLLQ QGNVESNEPS KDSEVLYLNS KSCLELVNPS SDNIATEEFV CTHNTQLSEM 300 KSGNDVGLNS RFVESAIEVG SMRLDLDAFD YTDPQLAISI GRAADKLQSK VKACPRKGTS 360 ELAASAVPVV EKVAGLTSTV LDNTPPTESS GAENGRLTHL VCEPLMESAR TKEPGRNNSK 420 ALLSPPEMLA TVSCEKDPKG KSSFPVKNFF DSSASIKYDV VATNFISSNE AAVQVDNGRL 480 ELEESGAFPG LETPGFLSPD VMESVMAPPT DVQHVPSETI NIEGSSVGAF PSDNIVDSLS 540 THPGDFIPPD TCTSEIQMNQ ELENLTETNV TGIHQEDASD LPEKETSSSR KRKDAPASYS 600 SWKSQKASLA GDMNEHDRST RHPRKQVAAP QLGDEPEDEG HGNGGLPLEN IDDDSSMHSS 660 NFIPVDPCTL EAQVDQNQKY FTESNCLANA NVVHSEDVPV VPGKESSKSG KRKVFSASNC 720 SRKSKKSSLA AGTQVVDELD EAQDNGGLPA EPPGSSVDEE DNDSEPGGDE ERDDENRVQI 780 ASRKKRASKK SKEPVTEKEK QVRKCNRSND TPEQPMQEPR KKFSHSTRRN KRCVKKDLLD 840 MPEDEIDFKR LPIRDIILFA EYKERLSVKE ATTSKIPPNN QSSDNPFHGG YSHYEEDEFA 900 SEQDKTHDDD QTYVRAQPSS SLFNHQSFTD RAPNSRWSKQ DTELFYEGIQ QFGTDLSMIQ 960 QLFPGRTRHQ VKLKYKKEER QNPLRLHEAL SRRPKDNSYF EKLIEQLQEV AAIREEQESY 1020 KDDLVDVSGE EDAELNAENN DEVTKPKQDE DVGVEEDQEE NVVAEDHHGP QKSGVSDEDV 1080 GDIWGSYGSE F*

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence Send to blast

MLFLSVARSA GKFQPKAKPR PKKVEFVPIP SIPPSKAKEK AVAASQTSLD TAISVQPVGI  60
MDEKLTGQIG SLSPSAPTGT KEPLKSNDGK TKLVEESGSP LATSDMVGVK EPQKYKEGLP  120
SWEIGSLEAA NLTPVRGNDA GSVGAVDSEA DCNGNQKYNF VKSAGAAGSL GFDSDLLDDI  180
IPKSLKTRAG GKFKPKVKPW QRNENPEPVS SSPSKCAEEE PKAHSQKTQS TEPVYVANTR  240
MNPIGRTLLQ QGNVESNEPS KDSEVLYLNS KSCLELVNPS SDNIATEEFV CTHNTQLSEM  300
KSGNDVGLNS RFVESAIEVG SMRLDLDAFD YTDPQLAISI GRAADKLQSK VKACPRKGTS  360
ELAASAVPVV EKVAGLTSTV LDNTPPTESS GAENGRLTHL VCEPLMESAR TKEPGRNNSK  420
ALLSPPEMLA TVSCEKDPKG KSSFPVKNFF DSSASIKYDV VATNFISSNE AAVQVDNGRL  480
ELEESGAFPG LETPGFLSPD VMESVMAPPT DVQHVPSETI NIEGSSVGAF PSDNIVDSLS  540
THPGDFIPPD TCTSEIQMNQ ELENLTETNV TGIHQEDASD LPEKETSSSR KRKDAPASYS  600
SWKSQKASLA GDMNEHDRST RHPRKQVAAP QLGDEPEDEG HGNGGLPLEN IDDDSSMHSS  660
NFIPVDPCTL EAQVDQNQKY FTESNCLANA NVVHSEDVPV VPGKESSKSG KRKVFSASNC  720
SRKSKKSSLA AGTQVVDELD EAQDNGGLPA EPPGSSVDEE DNDSEPGGDE ERDDENRVQI  780
ASRKKRASKK SKEPVTEKEK QVRKCNRSND TPEQPMQEPR KKFSHSTRRN KRCVKKDLLD  840
MPEDEIDFKR LPIRDIILFA EYKERLSVKE ATTSKIPPNN QSSDNPFHGG YSHYEEDEFA  900
SEQDKTHDDD QTYVRAQPSS SLFNHQSFTD RAPNSRWSKQ DTELFYEGIQ QFGTDLSMIQ  960
QLFPGRTRHQ VKLKYKKEER QNPLRLHEAL SRRPKDNSYF EKLIEQLQEV AAIREEQESY  1020
KDDLVDVSGE EDAELNAENN DEVTKPKQDE DVGVEEDQEE NVVAEDHHGP QKSGVSDEDV  1080
GDIWGSYGSE F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	711	725	RKVFSASNCSRKSKK
2	784	792	KRASKKSKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0152s0090.14.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214213	1e-174	AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024466754.1	0.0	uncharacterized protein LOC7475967 isoform X4
TrEMBL	A0A2K1YMI7	0.0	A0A2K1YMI7_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FPD9	0.0	A0A3N7FPD9_POPTR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-46	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0152s0090.14.p