PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 480aa    MW: 51148.1 Da    PI: 8.6096
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-105174427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              C++++rtG C yG++C+++H++
  SapurV1A.0152s0130.1.p 51 QDCPYYLRTGLCGYGASCRYNHPR 74
                            68********************96 PP
2zf-CCCH42.11.5e-1396120327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++lC++++rtGtCk+G++Ck++H++
  SapurV1A.0152s0130.1.p  96 QPLCQYYMRTGTCKFGASCKYNHPK 120
                             79*********************96 PP
3zf-CCCH35.81.4e-11141166227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C ++ +tG+Ck+G++CkF+H++
  SapurV1A.0152s0130.1.p 141 GERECTYYIKTGQCKFGATCKFHHPQ 166
                             5799********************97 PP
4zf-CCCH33.38e-11302328127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C+++++tG Ck+ ++Ck++H+p
  SapurV1A.0152s0130.1.p 302 PGQPDCQYYMKTGDCKFRSSCKYHHPP 328
                             5789*********************97 PP
5zf-CCCH30.75.5e-10349374227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             + + C ++ + G+Ck+G+ CkF H++
  SapurV1A.0152s0130.1.p 349 GVPACTHYTQRGQCKFGPACKFDHPM 374
                             7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6524775IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-64774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-64976IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-85074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45374IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.03293121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-695120IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-1196120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305139167IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821301329IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5301328IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-5306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4307328IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464347375IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5351377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4353372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDRYGRAQEG SQSDPAIEWT GSGQESGLEE GFWQLGLGET ESEYPERPNE QDCPYYLRTG  60
LCGYGASCRY NHPRDRTVVL RTVRTSGVEF PERVGQPLCQ YYMRTGTCKF GASCKYNHPK  120
QGGSSISPVS LNYYGYPLRL GERECTYYIK TGQCKFGATC KFHHPQPGNM QIPAQSLAPQ  180
VASVPAHTLY PTMQSLSVPS PQQYGLMFGR PPLLPGSYVQ GPFGHVLLSP SLVPYPSWSP  240
YPAPVSPVAS PNTQPAVGSG SVYGISPLSP SAPAYTGAYQ SIPTAKGPSS SSQKEHLFPE  300
RPGQPDCQYY MKTGDCKFRS SCKYHHPPEL VASKTNVVLS PMGLPLRPGV PACTHYTQRG  360
QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS DLRSKPSKDS  420
SSTRLSSSTS TPSGSVGSIY SKSPVSHSSV QQSGRSSSPS TSTSTSTSTS TSTGACTSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-109AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013662.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-160C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9HSD60.0B9HSD6_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-141C3H family protein