PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0130.8.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 459aa    MW: 49130.4 Da    PI: 8.7066
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0130.8.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.5e-104568427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              C++++rtG C yG++C+++H++
  SapurV1A.0152s0130.8.p 45 QDCPYYLRTGLCGYGASCRYNHPR 68
                            68********************96 PP
2zf-CCCH42.11.4e-1390114327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++lC++++rtGtCk+G++Ck++H++
  SapurV1A.0152s0130.8.p  90 QPLCQYYMRTGTCKFGASCKYNHPK 114
                             79*********************96 PP
3zf-CCCH35.91.3e-11135160227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C ++ +tG+Ck+G++CkF+H++
  SapurV1A.0152s0130.8.p 135 GERECTYYIKTGQCKFGATCKFHHPQ 160
                             5799********************97 PP
4zf-CCCH33.47.6e-11296322127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C+++++tG Ck+ ++Ck++H+p
  SapurV1A.0152s0130.8.p 296 PGQPDCQYYMKTGDCKFRSSCKYHHPP 322
                             5789*********************97 PP
5zf-CCCH30.75.2e-10343368227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             + + C ++ + G+Ck+G+ CkF H++
  SapurV1A.0152s0130.8.p 343 GVPACTHYTQRGQCKFGPACKFDHPM 368
                             7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6524169IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-64168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-64370IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-84468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-44768IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-787114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.03287115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-689114IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-1190114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-692113IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305133161IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4139159IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5295322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821295323IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5300322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4301322IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464341369IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-8343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5345371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4347366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDRYGRAQEG SQSDPAIEWT GSGQESGLEG LGETESEYPE RPNEQDCPYY LRTGLCGYGA  60
SCRYNHPRDR TVVLRTVRTS GVEFPERVGQ PLCQYYMRTG TCKFGASCKY NHPKQGGSSI  120
SPVSLNYYGY PLRLGERECT YYIKTGQCKF GATCKFHHPQ PGNMQIPAQS LAPQVASVPA  180
HTLYPTMQSL SVPSPQQYGL MFGRPPLLPG SYVQGPFGHV LLSPSLVPYP SWSPYPAPVS  240
PVASPNTQPA VGSGSVYGIS PLSPSAPAYT GAYQSIPTAK GPSSSSQKEH LFPERPGQPD  300
CQYYMKTGDC KFRSSCKYHH PPELVASKTN VVLSPMGLPL RPGVPACTHY TQRGQCKFGP  360
ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSDLRSKP SKDSSSTSQV  420
AVPVLQPAPV PAPAPAPAQG HAPHAKKTYQ TVPVHSSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0130.8.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-109AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314462.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-155C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLB9HSD60.0B9HSD6_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-131C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]