PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0130.9.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 458aa    MW: 48694.3 Da    PI: 8.5735
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0130.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.5e-105174427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              C++++rtG C yG++C+++H++
  SapurV1A.0152s0130.9.p 51 QDCPYYLRTGLCGYGASCRYNHPR 74
                            68********************96 PP
2zf-CCCH32.91.1e-107998827
                            GGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                            +++rtGtCk+G++Ck++H++
  SapurV1A.0152s0130.9.p 79 YYMRTGTCKFGASCKYNHPK 98
                            8*****************96 PP
3zf-CCCH35.91.3e-11119144227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++C ++ +tG+Ck+G++CkF+H++
  SapurV1A.0152s0130.9.p 119 GERECTYYIKTGQCKFGATCKFHHPQ 144
                             5799********************97 PP
4zf-CCCH33.47.5e-11280306127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C+++++tG Ck+ ++Ck++H+p
  SapurV1A.0152s0130.9.p 280 PGQPDCQYYMKTGDCKFRSSCKYHHPP 306
                             5789*********************97 PP
5zf-CCCH30.75.2e-10327352227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             + + C ++ + G+Ck+G+ CkF H++
  SapurV1A.0152s0130.9.p 327 GVPACTHYTQRGQCKFGPACKFDHPM 352
                             7899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.6524775IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-64774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-64976IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-85074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45374IPR000571Zinc finger, CCCH-type
SMARTSM003560.0697698IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-47997IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-87998IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5027999IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305117145IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4117144IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8119144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6119145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4123143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821279307IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5279306IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5284306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4285306IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6325352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.464325353IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-8327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5329355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4331350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDRYGRAQEG SQSDPAIEWT GSGQESGLEE GFWQLGLGET ESEYPERPNE QDCPYYLRTG  60
LCGYGASCRY NHPRDRTVYY MRTGTCKFGA SCKYNHPKQG GSSISPVSLN YYGYPLRLGE  120
RECTYYIKTG QCKFGATCKF HHPQPGNMQI PAQSLAPQVA SVPAHTLYPT MQSLSVPSPQ  180
QYGLMFGRPP LLPGSYVQGP FGHVLLSPSL VPYPSWSPYP APVSPVASPN TQPAVGSGSV  240
YGISPLSPSA PAYTGAYQSI PTAKGPSSSS QKEHLFPERP GQPDCQYYMK TGDCKFRSSC  300
KYHHPPELVA SKTNVVLSPM GLPLRPGVPA CTHYTQRGQC KFGPACKFDH PMGTLSYSPS  360
ASSLADMPVA PYPVGSSIGT LAPSSSSSDL RSKPSKDSSS TRLSSSTSTP SGSVGSIYSK  420
SPVSHSSVQQ SGRSSSPSTS TSTSTSTSTS TGACTSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0130.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-109AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013662.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-148C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9HSD60.0B9HSD6_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-131C3H family protein