PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0157s0170.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 200aa    MW: 22918.3 Da    PI: 10.1494
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0157s0170.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.47.1e-322474151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  SapurV1A.0157s0170.5.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74
                            79***********************************************95 PP
2K-box113.81.7e-3792186498
                   K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                             s++ s++ea+a+ +qqe+akL+++i nLq+++R++lGe+L++Ls+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++
  SapurV1A.0157s0170.5.p  92 SNNGSVSEANAQFYQQEAAKLRSQIGNLQNSNRNMLGESLSTLSVKELKSLEIKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNN 178
                             444459********************************************************************************* PP

                   K-box  91 nkaLrkkl 98 
                             n+ Lr+k+
  SapurV1A.0157s0170.5.p 179 NQLLRAKV 186
                             *****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.4591676IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-331789IPR002100Transcription factor, MADS-box
CDDcd002651.39E-431793No hitNo description
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-331838IPR002100Transcription factor, MADS-box
PfamPF003196.4E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-335374IPR002100Transcription factor, MADS-box
PfamPF014868.7E-28100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.104102198IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAYQNESQLS SPLRKLGRGK VEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYSNNSVKST IERYKKACAD SSNNGSVSEA NAQFYQQEAA KLRSQIGNLQ  120
NSNRNMLGES LSTLSVKELK SLEIKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ  180
LLRAKVFLFI YLSMPYCRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2016100187MEF2C
5f28_B2e-2016100187MEF2C
5f28_C2e-2016100187MEF2C
5f28_D2e-2016100187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0157s0170.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7143860.0JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002033.11e-126PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_011002034.11e-126PREDICTED: floral homeotic protein AGAMOUS-like
RefseqXP_011002035.11e-126PREDICTED: floral homeotic protein AGAMOUS-like
SwissprotQ435851e-111AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBLO651121e-124O65112_POPTR; AGAMOUS homolog
STRINGEOY278721e-113(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.14e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Cheung AY,Zhan XY,Wang H,Wu HM
    Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein.
    Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8
    [PMID:8632979]