PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0158s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 348aa    MW: 38767.2 Da    PI: 6.4146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0158s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +grW +eEde+l+++++  G g+W++ +++ g+ R++k+c++rw +yl
  SapurV1A.0158s0390.1.p 14 KGRWAAEEDEKLAKYIQANGEGSWRSLPKHAGLLRCGKSCRLRWINYL 61
                            79******************************99************97 PP
2Myb_DNA-binding49.41e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg+ ++eE++++v++ + lG++ W++Ia+ ++ gRt++++k++w+++l
  SapurV1A.0158s0390.1.p  67 RGNISAEEEDIIVKLQASLGNR-WSLIASNLP-GRTDNEIKNYWNSHL 112
                             7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.324961IPR017930Myb domain
SuperFamilySSF466893.36E-2611108IPR009057Homeodomain-like
SMARTSM007178.3E-111363IPR001005SANT/Myb domain
PfamPF002494.0E-141461IPR001005SANT/Myb domain
CDDcd001671.24E-71661No hitNo description
PROSITE profilePS5129424.36862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2365115IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1367112IPR001005SANT/Myb domain
CDDcd001674.22E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWAAE EDEKLAKYIQ ANGEGSWRSL PKHAGLLRCG KSCRLRWINY  60
LRADLKRGNI SAEEEDIIVK LQASLGNRWS LIASNLPGRT DNEIKNYWNS HLSRRIPSFR  120
SEEKGGRAGK FPAKKNKISH STPKDVTRAS TRKPLVENNT SNCYNSSIEA IQSLHKPTIE  180
KETLSSAIKD TIIQDPCKED KEQTGRRMVG SSGEKETLVW SKSDEKTSGN SLLPSPSVGK  240
IENDQSSGPF YHGIDNALCF NEVTDPNGGS TLNEERQKGL VVHTEESGEW DSCSSIRTPG  300
FEYWSWDDVM GGDDMLSWLR ESDEVEGESD QKLEEAMDHE KKNAMAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-23121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-231211625128MYB TRANSFORMING PROTEIN
1mse_C3e-23121162105C-Myb DNA-Binding Domain
1msf_C3e-23121162105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0158s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450981.11e-168transcription factor MYB63
TrEMBLB9GSG51e-167B9GSG5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s19920.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.15e-70myb domain protein 111