PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0159s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 241aa    MW: 27300.2 Da    PI: 8.4799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0159s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-1370116354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  SapurV1A.0159s0020.1.p  70 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 116
                             58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44767116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.69E-1170119No hitNo description
PfamPF000101.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1471126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1471123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1273122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00876154218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQPENCQENS QLYRFLTENG MVNVGPYGFP AAMQTLCTSS STSYHNNNYH FERSVITDMT  60
PQDRALAALK NHKEAEKRRR ERINSHLDKL RGLLPCNSKT DKASLLAKVV QRVKELKQQT  120
SELPGLESFP SETDEVTVLS DEYSIDGQLI FKASLCCEDR SDLMPDLIEI LKSLHLKTLK  180
AEMVTLGGRI RNVLIIAADK DHSVESVHFL QNALKSLLER SNSSERSKRR RVLDRKLVIQ  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227231KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0159s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1448040.0EF144804.1 Populus trichocarpa clone WS01118_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307967.21e-174transcription factor bHLH106
RefseqXP_011040758.11e-174PREDICTED: transcription factor bHLH106-like
SwissprotO806744e-80BH106_ARATH; Transcription factor bHLH106
TrEMBLB9H8T81e-173B9H8T8_POPTR; BHLH family protein
STRINGPOPTR_0006s03550.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]