PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0161s0110.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 307aa    MW: 34026.3 Da    PI: 4.6719
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0161s0110.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-072341246
                            HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            ++++++  G++ W+ Ia+ ++ gRt++++k  w++
  SapurV1A.0161s0110.3.p  2 IIRLHAAIGSR-WSIIAQQLP-GRTDNDVKKCWNS 34
                            67899999***.*********.********98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.389140IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-13137IPR009057Homeodomain-like
CDDcd001679.75E-5136No hitNo description
PfamPF002495.1E-6234IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-8242IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MIIRLHAAIG SRWSIIAQQL PGRTDNDVKK CWNSRLRKKL SEMGIDPVTH KPLSKILADY  60
GNIGGHVKSG SRIGSLSRDL KNVFTMKPEK YNSILPEGIS NIDGHLMTTM LPPKMEPVQE  120
CFLNKFNNDS INGNHSLDLL YQLQAIKMVT EASGTCAEYQ TMLEPNHNVF DEGSSSSSTC  180
SIEAQENLPT SSSWCDFLLE DQFLPSDPQE EQENAAELSS KDLTNQAQNV IVTNHCQNPG  240
MMKPKYDQII AEVNVGVDLT VQSNIGFGDQ VAPSSSQHSS FVETIIDGEN KIFLDFPNLL  300
EELFNY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0161s0110.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321544.10.0transcription factor MYB35
TrEMBLB9IEI50.0B9IEI5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.13e-33MYB_related family protein