PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0440.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 442aa    MW: 49298.6 Da    PI: 6.2032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0440.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.73e-12350248
                     NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp 48
                            p+GfrFhPt ee++++yL++k+eg++  ++++i e+ ++y+ +Pwd+p
  SapurV1A.0162s0440.2.p  3 PVGFRFHPTVEEIIDYYLANKLEGRDYLVDDHIGEIdHLYQKDPWDIP 50
                            89************************999999****66999*****99 PP
2NAM35.72.5e-115311172127
                     NAM  72 krknratksgyWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127
                             k  nr+tk+g Wk tg  +++++  ++e++g+k+ Lvf+++   ++k + t Wv+he++
  SapurV1A.0162s0440.2.p  53 KLINRKTKNGNWKLTGMPRDIKRGgTNEVIGTKRNLVFHQKcpASKKLVGTGWVIHEFQ 111
                             5679******************9866778**********76445666679********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.9392130IPR003441NAC domain
SuperFamilySSF1019411.96E-272128IPR003441NAC domain
PfamPF023654.2E-153111IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MTPVGFRFHP TVEEIIDYYL ANKLEGRDYL VDDHIGEIDH LYQKDPWDIP DGKLINRKTK  60
NGNWKLTGMP RDIKRGGTNE VIGTKRNLVF HQKCPASKKL VGTGWVIHEF QSRISPPDER  120
ALVLCKLKDR GDKSAADLPN DEGEASLFMG SDFDNNAAET HNREVDELWR LSLINSDEDD  180
INFSLPLQSQ IHLQNSLVGE EDLHLADSFL VFPDEYGSEN AAFSHPSTYT LQSGSENAAF  240
SHPSTYILQS SSHAYEEPAN LYGGHGDLKI ARQLQMAPGD DILLMGASSM GSTTATRHEH  300
IESMQSGGEV IQETRQPLPP LRMPETRQPR PPTPVMAPKF VEREKVSHKD IPFQGMISRS  360
FIPKAEVGIK ESSGIAESDR KIVPVTNPKP RSNDSARKGR FIHHETTISS HRSCPPSVYL  420
LNAVLGVVLF LIMLREALIV H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-12311116139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0162s0440.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440602.11e-145NAC domain-containing protein 40
TrEMBLA0A3N7FYL31e-144A0A3N7FYL3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10320.11e-142(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-20NAC domain containing protein 69