PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0450.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 246aa    MW: 28425.2 Da    PI: 5.032
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.4e-4381363127
                     NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 
                             +G+ FhPtdeelv +yL+ k++g   +  + i+ev+++++ePw Lp  +++   ++ e+yfFs+r+ kya+++r+nr+t+ g+Wk t
  SapurV1A.0162s0450.1.p   8 VGYGFHPTDEELVGYYLRLKMHGGYEQDVRLIEEVNVCDYEPWALPGLLRNqdpNDPECYFFSPRSYKYANSDRANRKTEGGFWKVT 94 
                             79*********************99887799***************64433123555****************************** PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             gkd++v +k ++e++ +kktLvfykg+ ++g++t+W+mhey+
  SapurV1A.0162s0450.1.p  95 GKDRTVNAKaTKEHIATKKTLVFYKGSVSNGVRTNWIMHEYH 136
                             *******9978888***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.5776155IPR003441NAC domain
SuperFamilySSF1019414.84E-477154IPR003441NAC domain
PfamPF023653.1E-248136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDFQPSRVGY GFHPTDEELV GYYLRLKMHG GYEQDVRLIE EVNVCDYEPW ALPGLLRNQD  60
PNDPECYFFS PRSYKYANSD RANRKTEGGF WKVTGKDRTV NAKATKEHIA TKKTLVFYKG  120
SVSNGVRTNW IMHEYHPTFS FHNQREFVLC KLKKDPEAIM PAYEEGEASS NVTSYHLENQ  180
NSNEYSHPRN SEEGGYDAPM PSYFTANEQD DYSYQMQLHL NSFRDDDGTG DYNLDAAMQY  240
PYGNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-29915423167NAC domain-containing protein 19
3swm_B4e-29915423167NAC domain-containing protein 19
3swm_C4e-29915423167NAC domain-containing protein 19
3swm_D4e-29915423167NAC domain-containing protein 19
3swp_A4e-29915423167NAC domain-containing protein 19
3swp_B4e-29915423167NAC domain-containing protein 19
3swp_C4e-29915423167NAC domain-containing protein 19
3swp_D4e-29915423167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0162s0450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440064.11e-117protein NTM1-like 9 isoform X5
TrEMBLB9I9651e-121B9I965_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10330.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-48NAC transcription factor-like 9