PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0163s0040.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 227aa    MW: 24896.1 Da    PI: 8.4978
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0163s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.8e-1863117256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ +++keq + Lee F++ ++++ +++e LA +l+L  rqV vWFqNrRa+ k
  SapurV1A.0163s0040.2.p  63 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 117
                             788899***********************************************98 PP
2HD-ZIP_I/II115.82.5e-3763151190
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL
  SapurV1A.0163s0040.2.p  63 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 149
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 ree 90 
                             r +
  SapurV1A.0163s0040.2.p 150 R-A 151
                             9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-1748117IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1851120IPR009057Homeodomain-like
PROSITE profilePS5007116.61759119IPR001356Homeobox domain
SMARTSM003893.2E-1561123IPR001356Homeobox domain
CDDcd000863.63E-1562120No hitNo description
PfamPF000464.7E-1563117IPR001356Homeobox domain
PROSITE patternPS00027094117IPR017970Homeobox, conserved site
SMARTSM003403.4E-22119162IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-9119153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAVSPSSISS LELTMSMPGF SSSPSFPSSD LDINQLPSGA GEEEWITAGM DDEEESTNGG  60
PPRKKLRLSK EQSRLLEESF RQRHTLNPRQ KEALALQLKL RPRQVEVWFQ NRRARSKLKQ  120
TEMECEYLKR WFGSLTEQNR RLQREVEELR ALKVGPPTVI SPHSCEPLPA STLTMCPSCE  180
RVTTTGSDKG STKTTTTAEA TPATAATLSS KVGAPALQSR QSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111119RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0163s0040.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462431.11e-137homeobox-leucine zipper protein HOX3 isoform X2
SwissprotQ0JKX12e-82HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-82HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A3N7FED61e-136A0A3N7FED6_POPTR; Uncharacterized protein
STRINGcassava4.1_022041m1e-129(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-68homeobox-leucine zipper protein 17