PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0163s0040.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 178aa    MW: 19880.6 Da    PI: 10.212
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0163s0040.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.6e-181468256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                            rk+ +++keq + Lee F++ ++++ +++e LA +l+L  rqV vWFqNrRa+ k
  SapurV1A.0163s0040.3.p 14 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 68
                            788899***********************************************98 PP
2HD-ZIP_I/II116.71.4e-3714102190
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL
  SapurV1A.0163s0040.3.p  14 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 100
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 ree 90 
                             r +
  SapurV1A.0163s0040.3.p 101 R-A 102
                             9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-16368IPR009057Homeodomain-like
SuperFamilySSF466892.97E-17771IPR009057Homeodomain-like
PROSITE profilePS5007116.6171070IPR001356Homeobox domain
SMARTSM003893.2E-151274IPR001356Homeobox domain
CDDcd000867.76E-141371No hitNo description
PfamPF000463.0E-151468IPR001356Homeobox domain
PROSITE patternPS0002704568IPR017970Homeobox, conserved site
SMARTSM003403.4E-2270113IPR003106Leucine zipper, homeobox-associated
PfamPF021837.8E-1070104IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDDEEESTNG GPPRKKLRLS KEQSRLLEES FRQRHTLNPR QKEALALQLK LRPRQVEVWF  60
QNRRARSKLK QTEMECEYLK RWFGSLTEQN RRLQREVEEL RALKVGPPTV ISPHSCEPLP  120
ASTLTMCPSC ERVTTTGSDK GSTKTTTTAE ATPATAATLS SKVGAPALQS RQSSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0163s0040.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038655.11e-110PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-72HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-72HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2K1YSC31e-107A0A2K1YSC3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12300.11e-108(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-66homeobox-leucine zipper protein 17