PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0163s0040.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 153aa    MW: 16970.5 Da    PI: 10.2275
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0163s0040.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.54e-1215432856
                            HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                            +++e LA +l+L  rqV vWFqNrRa+ k
  SapurV1A.0163s0040.4.p 15 RQKEALALQLKLRPRQVEVWFQNRRARSK 43
                            6899***********************98 PP
2HD-ZIP_I/II85.66.7e-2814772690
             HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                            +++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr +
  SapurV1A.0163s0040.4.p 14 QRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELR-A 77
                            689***********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.15E-71446No hitNo description
Gene3DG3DSA:1.10.10.601.1E-101451IPR009057Homeodomain-like
SuperFamilySSF466897.7E-101555IPR009057Homeodomain-like
PROSITE profilePS5007111.8071545IPR001356Homeobox domain
PfamPF000461.6E-91543IPR001356Homeobox domain
PROSITE patternPS0002702043IPR017970Homeobox, conserved site
SMARTSM003403.4E-224588IPR003106Leucine zipper, homeobox-associated
PfamPF021836.0E-104579IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MINLWSSINL SYMQRQKEAL ALQLKLRPRQ VEVWFQNRRA RSKLKQTEME CEYLKRWFGS  60
LTEQNRRLQR EVEELRALKV GPPTVISPHS CEPLPASTLT MCPSCERVTT TGSDKGSTKT  120
TTTAEATPAT AATLSSKVGA PALQSRQSSA AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13745RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0163s0040.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038655.15e-84PREDICTED: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-54HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-54HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2K1YSC37e-81A0A2K1YSC3_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12300.11e-81(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-45homeobox-leucine zipper protein 17