PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0163s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 225aa    MW: 25443.7 Da    PI: 9.5732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0163s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171460248
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            g+W+++Ed++l d+++++G g+W++I++  g+ R++k+c++rw +yl
  SapurV1A.0163s0150.1.p 14 GAWSKQEDQKLTDYIRKHGEGCWRSIPQAAGLLRCGKSCRLRWINYL 60
                            79*****************************99************97 PP
2Myb_DNA-binding52.31.3e-1666111148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  SapurV1A.0163s0150.1.p  66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                             8999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.328860IPR017930Myb domain
SuperFamilySSF466891.06E-2810107IPR009057Homeodomain-like
SMARTSM007172.4E-131262IPR001005SANT/Myb domain
PfamPF002491.0E-151460IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-231467IPR009057Homeodomain-like
CDDcd001671.13E-111560No hitNo description
PROSITE profilePS5129426.90661115IPR017930Myb domain
SMARTSM007171.0E-1565113IPR001005SANT/Myb domain
PfamPF002493.4E-1566111IPR001005SANT/Myb domain
CDDcd001671.28E-1168111No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2668116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRHGRNKQD RNQGAWSKQE DQKLTDYIRK HGEGCWRSIP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLIKMGI  120
DPNNHRLRQN LLRPHNPQHP ATASSSSGLK THQAIQQPTK SHVDKEQVSD AVSCLEDDTC  180
ALPDLNLDLT MSFHSPSAPD VEGNPKDSRP QLDTAPSPTL LLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28101154108B-MYB
1h8a_C7e-281211526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0163s0150.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311495.21e-137transcription repressor MYB4
SwissprotQ388517e-73MYB6_ARATH; Transcription repressor MYB6
TrEMBLB9HJ991e-136B9HJ99_POPTR; Uncharacterized protein
STRINGPOPTR_0008s12750.11e-137(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-75myb domain protein 6