PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0163s0470.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 500aa    MW: 55847.4 Da    PI: 6.4096
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0163s0470.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.52.1e-06235336
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg 36
                            e++C+ ++  +   +C+ +  +lC +C  ++H+ 
  SapurV1A.0163s0470.2.p  2 EKVCEFCKAARPVVYCKADAAYLCLSCDAKIHSA 35
                            679*****************************54 PP
2CCT32.92.3e-12462499138
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38 
                             Re+a++RYkeK+k R  +K+irY+ RK   + R+R +G
  SapurV1A.0163s0470.2.p 462 RENAMMRYKEKKKARMQDKQIRYAPRKPKSDVRKRGNG 499
                             9**********************************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.57147IPR000315B-box-type zinc finger
SMARTSM003362.3E-7147IPR000315B-box-type zinc finger
CDDcd000216.10E-5435No hitNo description
PROSITE profilePS501198.5744387IPR000315B-box-type zinc finger
SMARTSM003362.54887IPR000315B-box-type zinc finger
PfamPF062031.3E-7462499IPR010402CCT domain
PROSITE profilePS5101710.893462499IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEKVCEFCKA ARPVVYCKAD AAYLCLSCDA KIHSANALFN RHLRTLLCDS CRNHPAYAQC  60
LDHRMLMCLG CDRCLHEVSS HHQKRLVSSY LGCPSAKDFA SLWGFEFGEL DKSVVKDQLV  120
SISCSSVQPS ASKFDIPGKS CQQIGRSSRK SRVIHSTLVS GAESGVGSGN QQPELSYIGP  180
QKESTLFILE QILDLKRLQL TDFDNNTPMK CDHKQKNISS MLNTSKKLDY NLNHSQHSQD  240
LVTNLQQADC QLQGLKEDSL PLSFSQPEHL PFFSTAANAL PGESFWPSKS PIENIQLWSQ  300
NMQDLGVCED NICHDDDYNI PDVDKTFSNF EEFFGGDQDP IQAFLDENDF SCSFIEKDIP  360
LEKSNNSDGR ARKDASAASS VYISCSVHIE NDKDPSSQTY NCSGSLDLAH TIRSPYSRYS  420
ISSHGAEGRS NEYLDSELSP YISNVEAPCH SPDLEGAHTE ARENAMMRYK EKKKARMQDK  480
QIRYAPRKPK SDVRKRGNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0163s0470.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022637.10.0PREDICTED: putative zinc finger protein At1g68190 isoform X1
TrEMBLA0A1L6K4S50.0A0A1L6K4S5_POPTO; Uncharacterized protein
STRINGPOPTR_0008s12410.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-29B-box type zinc finger protein with CCT domain