PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0164s0050.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 337aa    MW: 36749.4 Da    PI: 8.1636
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0164s0050.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-113258127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            ++ + C++f++t  CkyG +CkF+H++
  SapurV1A.0164s0050.4.p 32 PGVPDCPYFLKTQRCKYGLNCKFNHPK 58
                            5789*********************96 PP
2zf-CCCH41.32.5e-1380104327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             +++C f+++tG+Ck+G++CkF+H++
  SapurV1A.0164s0050.4.p  80 EPPCAFYMKTGICKFGATCKFHHPK 104
                             79*********************96 PP
3zf-CCCH39.41e-12158184127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++ C+f+++tG CkyG++C+++H++
  SapurV1A.0164s0050.4.p 158 PGEVDCPFYLKTGSCKYGATCRYNHPE 184
                             57899********************96 PP
4zf-CCCH38.61.8e-12241265226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             ++ +C+f+++tG+Ck+G++Ck++H+
  SapurV1A.0164s0050.4.p 241 GQTECDFYMKTGECKFGETCKYHHP 265
                             6789********************8 PP
5zf-CCCH40.44.8e-13297318627
                             -SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                             C+++++tGtCkyG++CkF H+p
  SapurV1A.0164s0050.4.p 297 CPYYMKTGTCKYGATCKFDHPP 318
                             ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-63158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7653159IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-93358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63661IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-53759IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-777104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.44177105IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-1180104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-681105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-582103IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554157185IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10159184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5163184IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6239266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6239268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131239267IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10241265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4245265IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666291319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6295318IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10297318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6297316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLLTLLIRLL LDLNALLKVP PIATSETFPE RPGVPDCPYF LKTQRCKYGL NCKFNHPKEK  60
LSLGVSEDTS DSALPERPSE PPCAFYMKTG ICKFGATCKF HHPKDIQIPL AGQGYDNAVQ  120
INSVVDNGET TGDVNVIKTP VSVTPALLHN SKGLPIRPGE VDCPFYLKTG SCKYGATCRY  180
NHPERTAINP PAAAISHPIL APSMANLNLG VFSPAASIYQ TIDSRLSTLG MGSAVYPQRP  240
GQTECDFYMK TGECKFGETC KYHHPIDRSA PTAKQTESLT VKLTLAGLPR REGAVHCPYY  300
MKTGTCKYGA TCKFDHPPPG EVMAFPNLKE LLEQNQ*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0164s0050.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2320646e-66CU232064.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012050.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q31e-139C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZDR70.0A0A2K1ZDR7_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18390.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-141floral homeotic protein (HUA1)