PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0164s0050.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 332aa    MW: 35960.6 Da    PI: 7.4695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0164s0050.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-11150174226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C +++ t tCk+Gd+CkF H+
  SapurV1A.0164s0050.5.p 150 GEKDCAYYMLTRTCKFGDTCKFDHP 174
                             7889********************9 PP
2zf-CCCH36.21e-11201227127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++ + C++f++t  CkyG +CkF+H++
  SapurV1A.0164s0050.5.p 201 PGVPDCPYFLKTQRCKYGLNCKFNHPK 227
                             5789*********************96 PP
3zf-CCCH41.42.4e-13249273327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             +++C f+++tG+Ck+G++CkF+H++
  SapurV1A.0164s0050.5.p 249 EPPCAFYMKTGICKFGATCKFHHPK 273
                             79*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.896148176IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4148175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5149175IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-9150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4154173IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6200227IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765200228IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9202227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6205230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5206228IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7246273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441246274IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11249273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5251272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAKQLYGYGA PATSASRSLT DSLLTRYLGT GSDPLSSDSS KYSASSSMYL TQSDNALRYS  60
VDRGIASAAA AGASPHLSSW PPPPGVDAPY AVDSFASGLK RTPEVLYHPT LLGAHSTIGQ  120
SEDWYTTNAL AKRARFETTS HLPIYPQRPG EKDCAYYMLT RTCKFGDTCK FDHPVWVPEG  180
GIPDWKEVPP IATSETFPER PGVPDCPYFL KTQRCKYGLN CKFNHPKEKL SLGVSEDTSD  240
SALPERPSEP PCAFYMKTGI CKFGATCKFH HPKDIQIPLA GQGYDNAVQI NSVVDNGETT  300
GDVNVIKTPV SVTPALLHNS KGLPIRPVML F*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0164s0050.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312214.20.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-106C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR60.0A0A2K1ZDR6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-106floral homeotic protein (HUA1)