PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0164s0320.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 250aa MW: 27936.3 Da PI: 7.9437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0164s0320.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY++YA+++GF +r++ ++ s+r+g+i++rt+vC++eg+r++++k +r++ra+tr+gC+a++ +k+++g w++ +l +eH+ SapurV1A.0164s0320.1.p 76 EFYCSYATRTGFVTRMRDHNCSQRDGSIISRTLVCNREGFRKSTDKPrMPWSRKPRAVTRVGCRARVSFRKQSNGAWVIRSLIKEHT 162 6****************************************99984556899***************************** PP FAR1 87 Hela 90 H+la SapurV1A.0164s0320.1.p 163 HPLA 166 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-25	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDLVQGPDVP DEDVDNSSDG NPQHGSDGTI GGSSIEATSQ PEQSDKMTPN STGGFELTVV 60 EPYVGQEFES EAAALEFYCS YATRTGFVTR MRDHNCSQRD GSIISRTLVC NREGFRKSTD 120 KPRMPWSRKP RAVTRVGCRA RVSFRKQSNG AWVIRSLIKE HTHPLALPES HSPKARGNPK 180 IYQVPADDRR VHELMRELMV EKKRNASLRE FIHLLFNHIE EHTQGLSEKI QCVVEKVKKI 240 ESDGKNSGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0164s0320.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002311261.2	1e-176	protein FAR1-RELATED SEQUENCE 12
TrEMBL	B9HHY3	1e-174	B9HHY3_POPTR; FAR1 family protein
STRING	POPTR_0008s07650.1	1e-175	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0164s0320.1.p