PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0164s0340.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 714aa    MW: 77813.6 Da    PI: 6.3011
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0164s0340.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14280339155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  SapurV1A.0164s0340.2.p 280 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 339
                             57*******************666664478446**********99*************98 PP
2AP246.68.2e-15382433155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0164s0340.2.p 382 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 433
                             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-16280349IPR016177DNA-binding domain
CDDcd000182.53E-21280349No hitNo description
PfamPF008474.1E-11280339IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-14281348IPR001471AP2/ERF domain
SMARTSM003801.5E-28281353IPR001471AP2/ERF domain
PROSITE profilePS5103218.861281347IPR001471AP2/ERF domain
PRINTSPR003673.9E-6282293IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17382443IPR016177DNA-binding domain
CDDcd000182.11E-24382443No hitNo description
PfamPF008471.0E-9382433IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18383442IPR001471AP2/ERF domain
PROSITE profilePS5103219.045383441IPR001471AP2/ERF domain
SMARTSM003801.5E-33383447IPR001471AP2/ERF domain
PRINTSPR003673.9E-6423443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MASTNKWLGF SLSPQELPSS QSDHQDHSQN KDSRLRFHSD EISGADHVSG ESFDLTSDST  60
APSLNLPASF GTFEAYRNNQ SQDPNYSTTS DVPIFLGSSC NSQNIDQIQE PKLENFLGGH  120
SFGNHEHKLI VCSTMYDTSG DYMFQNCSLQ LPSEDASNER TSSNGGGDTS INNNNTNSSI  180
GLSMIKTWLR NQPAPTQQDT SNKSNGGAQS LSLSMSTGSQ SAGSALPLLA VNGGGSRTGG  240
EQSFSDNNKQ QKTTPSIDTQ TGAIETVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQTR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPIST YEKEVEEMKH  360
MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  420
AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI IESSTLPVGG AAKRLKEVEH AEITTDVQRI  480
DDRDSSSSQL IDGTVNYSAA AHHGWPTIAF QQAQAFSMQY PYGQRVWCKQ EQDSDNHGYQ  540
EIHQLQLGNS QNFFQPSALH NVMSMDSSSM EHSSCSDSVM YSGGGHDGTS TGTNGSYHQG  600
IGYGGNAGYA VPMATVIANN GNTQDQGSGY GDGEGKALGY ENMFSSSDPY HARNLYYLSQ  660
QSSSGVIKAS AYDQGSACNS WVPTAVPTIA ARSNNMAVCH GAPPPFTVWN EST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0164s0340.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007180.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HHX90.0B9HHX9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07610.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-127AP2 family protein