PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0164s0380.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 307aa    MW: 34612.9 Da    PI: 9.8828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0164s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-15135179347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qky
  SapurV1A.0164s0380.1.p 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVSRTPTQVASHAQKY 179
                             8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3682479IPR017884SANT domain
SMARTSM007174.0E-62577IPR001005SANT/Myb domain
SuperFamilySSF466896.85E-102776IPR009057Homeodomain-like
CDDcd001671.07E-52874No hitNo description
PROSITE profilePS5129420.586128184IPR017930Myb domain
SuperFamilySSF466899.72E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-18131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.3E-13132179IPR009057Homeodomain-like
SMARTSM007174.7E-13132182IPR001005SANT/Myb domain
CDDcd001678.25E-11135180No hitNo description
PfamPF002492.4E-12135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKWEKEILSP APYLSRANWL IEESKNTKWT PAENKAFEIA LAVYDDDTPD RWHKVAAIIP  60
GKTVRDVIKQ YKELELDVSY IEAGLIPVPG YSTSPFTLDW VNENGYDGFK QSFSLGGKRS  120
STGRPADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVVSRTPT QVASHAQKYF  180
IRQLSGGKDK RRSSIHDITT VNLNDARTPS PENKRPSPDQ SGEISQQPNS AAMPRTHFQW  240
NQPNGGGAVA FDSTNANMFM SAPYGINSYG LKMKGQNPHR GAIHDSYIRQ QTMGFQMLSA  300
HHYPHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0164s0380.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299827.20.0transcription factor DIVARICATA
RefseqXP_024448358.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-140DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9GIV00.0B9GIV0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s25590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-107Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]