PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0166s0360.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 552aa MW: 60376.6 Da PI: 8.6024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0166s0360.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	497	520	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f C+ G+ C+F H+ SapurV1A.0166s0360.1.p 497 QKPCMYFKTPKGCRNGSDCHFQHD 520 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.746	494	522	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	498	521	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence Send to blast
MKRSRKSGRV SWAPALNLCQ VRLFLSEDCP SEVGGQVLDH LQKNTLRLLP ISSSKDSNDL 60 PPGFQGTRVL NPYIKELSNI HRVQWKCPPN FVVNYDWRVT VGEESQESEA QKLREMRVLE 120 AVYPRPSSVP PSPAVSLDVE EEIYDDSLTP IIPLIPVEEE EAAEMPAALT EPQKNPTTSL 180 TPALPSALLS FGIVNSSNCN TTALNPPASQ NPELGRLPNP GTHPITSASA AVTAIMKSKE 240 QGGCIDTDLL VKFFGGPKMV DKLISGNQTP VSSSRSPLCA KPAMVSAPSP ANGISQHLPS 300 EELPWSKPVD QIPITGPKPA VHFPSMAYNG SLHYQLSQAQ MTTSRTSVHQ DGVPATGLEV 360 APPIPVPIQD PVRASSSSRP PVGNLFPTSN SMQPAPSIVP AESKTPQISY FTDNHPSPMF 420 DLVKQPKQPI SVPQAGMKTN LVKDVSYIKK LIKEHGTVKK EMKDRSLFHS GNHYYNHYRN 480 PESTQNSRNR ELKPKFQKPC MYFKTPKGCR NGSDCHFQHD MSFQFQAGSG DPELQVAKRM 540 RFSGEITAGR T*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence Send to blast

MKRSRKSGRV SWAPALNLCQ VRLFLSEDCP SEVGGQVLDH LQKNTLRLLP ISSSKDSNDL  60
PPGFQGTRVL NPYIKELSNI HRVQWKCPPN FVVNYDWRVT VGEESQESEA QKLREMRVLE  120
AVYPRPSSVP PSPAVSLDVE EEIYDDSLTP IIPLIPVEEE EAAEMPAALT EPQKNPTTSL  180
TPALPSALLS FGIVNSSNCN TTALNPPASQ NPELGRLPNP GTHPITSASA AVTAIMKSKE  240
QGGCIDTDLL VKFFGGPKMV DKLISGNQTP VSSSRSPLCA KPAMVSAPSP ANGISQHLPS  300
EELPWSKPVD QIPITGPKPA VHFPSMAYNG SLHYQLSQAQ MTTSRTSVHQ DGVPATGLEV  360
APPIPVPIQD PVRASSSSRP PVGNLFPTSN SMQPAPSIVP AESKTPQISY FTDNHPSPMF  420
DLVKQPKQPI SVPQAGMKTN LVKDVSYIKK LIKEHGTVKK EMKDRSLFHS GNHYYNHYRN  480
PESTQNSRNR ELKPKFQKPC MYFKTPKGCR NGSDCHFQHD MSFQFQAGSG DPELQVAKRM  540
RFSGEITAGR T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0166s0360.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214417	0.0	AC214417.1 Populus trichocarpa clone POP037-E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310301.1	0.0	zinc finger CCCH domain-containing protein 6
TrEMBL	B9HFK4	0.0	B9HFK4_POPTR; Uncharacterized protein
STRING	POPTR_0007s13990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9

Link Out ? help Back to Top
Phytozome	SapurV1A.0166s0360.1.p