PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0168s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 891aa    MW: 98847.3 Da    PI: 9.2407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0168s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.26.7e-21798878186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                             +W+ +ev+ Li++r e+++r++  + +++lWee+s ++++ g++rsp qCk  w +l+++y++ k   k+     ++++pyf++++
  SapurV1A.0168s0020.1.p 798 KWKPEEVKSLIKLRGELHSRFQVVRGRMALWEEISTNLMADGINRSPGQCKYLWTSLAQKYEESKSDPKS-----QKSWPYFEDMD 878
                             7***************************************************************999998.....456*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.3E-6881331IPR001279Metallo-beta-lactamase
SuperFamilySSF562813.16E-7082496IPR001279Metallo-beta-lactamase
SMARTSM008492.8E-2594291IPR001279Metallo-beta-lactamase
PfamPF127061.3E-11106241IPR001279Metallo-beta-lactamase
PfamPF075211.2E-4435468IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.072791855IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-5792857IPR009057Homeodomain-like
PfamPF138371.2E-18796880No hitNo description
CDDcd122038.59E-20798862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MAAAFSALSL SPYTLVCRHN STKHSIACST ASPTTTTIGT RGTKAPPRNK RNGRMEGAGK  60
SMEDSVKRKM EQFYEGSDGP PLRIVPIGGL GEIGMNCMLV GNFDRYILID AGVMFPDYDE  120
LGVQKIIPDT TFIRRWRHKI EAVIITHGHE DHIGALPWVI PALDHHTPIY ASSFTMELIK  180
KRLKENGIFV PSRLKVFKTK RKFTAGPFEI EPIRVTHSIP DCCGLVLRCA DGTILHTGDW  240
KIDESPMDGK VFDRETLEEL SKEGVTLMMS DSTNILSPGR TISESVVADA LLRRISAAKG  300
RIITTQFASN IHRLGSVKAA ADLTGRKMVF VGMSLRTYLD AAWKDGKAPI DPSTLVKVED  360
IDAYAPKDLL IVTTGSQAEP RAALNLASYG SSHALKLNKE DVILYSAKVI PGNESRVMKM  420
MNRISEIGST IVMGRNELLH TSGHGYRGKL EEVLRIVKPQ HFLPIHGELL FLKEHELLGK  480
STGIRHTTVI KNGEMLGVSH LRKRKVLSNG FVSLGKENLQ LMYNDGDKAF GTSTELCVDE  540
RLRIATDGIV VVSMEILRPQ NADGLVENSL KGKIKITTRC LWLDKGKLLD ALHKAAHAAL  600
SSCPVNCPLA HMERTVSEML RKMVRKYSGK RPEVIAIAVE NPVAVLSDEL NEKLSGHSHA  660
GLGISALRKT ADQHRKKNQV DRKQHGGNDY AHLEKTSAKN SEVDGFKFER ELSKEEETSS  720
SPSLAEGHSS NSKNQDNFRK SFVPPSSVHE LVKSDENLVP PGEHVDKLKK DGTISSDDDL  780
LENQNSRSKR SEPVKRTKWK PEEVKSLIKL RGELHSRFQV VRGRMALWEE ISTNLMADGI  840
NRSPGQCKYL WTSLAQKYEE SKSDPKSQKS WPYFEDMDNI LSDSETMATE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0t_A2e-848264019560RIBONUCLEASE J
5a0t_B2e-848264019560RIBONUCLEASE J
5a0v_A2e-848264019560RIBONUCLEASE J
5a0v_B2e-848264019560RIBONUCLEASE J
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0168s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321691.20.0uncharacterized protein LOC7463114
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLB9IF880.0B9IF88_POPTR; Uncharacterized protein
STRINGPOPTR_0015s10570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]