PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0168s0020.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 740aa MW: 82282.4 Da PI: 9.3566

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0168s0020.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5.2e-21	647	727	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev+ Li++r e+++r++ + +++lWee+s ++++ g++rsp qCk w +l+++y++ k k+ ++++pyf++++ SapurV1A.0168s0020.3.p 647 KWKPEEVKSLIKLRGELHSRFQVVRGRMALWEEISTNLMADGINRSPGQCKYLWTSLAQKYEESKSDPKS-----QKSWPYFEDMD 727 7*************************************************************999998.....456*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	1.8E-37	9	180	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	3.45E-43	14	345	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	9.8E-5	284	317	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profile	PS50090	8.072	640	704	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.4E-5	641	706	IPR009057	Homeodomain-like
Pfam	PF13837	9.0E-19	645	729	No hit	No description
CDD	cd12203	1.25E-19	647	711	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence Send to blast
MVMKITLVIP ALDHHTPIYA SSFTMELIKK RLKENGIFVP SRLKVFKTKR KFTAGPFEIE 60 PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPMDGKV FDRETLEELS KEGVTLMMSD 120 STNILSPGRT ISESVVADAL LRRISAAKGR IITTQFASNI HRLGSVKAAA DLTGRKMVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHALKLNKED VILYSAKVIP GNESRVMKMM NRISEIGSTI VMGRNELLHT SGHGYRGKLE 300 EVLRIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTTVIK NGEMLGVSHL RKRKVLSNGF 360 VSLGKENLQL MYNDGDKAFG TSTELCVDER LRIATDGIVV VSMEILRPQN ADGLVENSLK 420 GKIKITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLAH MERTVSEMLR KMVRKYSGKR 480 PEVIAIAVEN PVAVLSDELN EKLSGHSHAG LGISALRKTA DQHRKKNQVD RKQHGGNDYA 540 HLEKTSAKNS EVDGFKFERE LSKEEETSSS PSLAEGHSSN SKNQDNFRKS FVPPSSVHEL 600 VKSDENLVPP GEHVDKLKKD GTISSDDDLL ENQNSRSKRS EPVKRTKWKP EEVKSLIKLR 660 GELHSRFQVV RGRMALWEEI STNLMADGIN RSPGQCKYLW TSLAQKYEES KSDPKSQKSW 720 PYFEDMDNIL SDSETMATE*

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence Send to blast

MVMKITLVIP ALDHHTPIYA SSFTMELIKK RLKENGIFVP SRLKVFKTKR KFTAGPFEIE  60
PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPMDGKV FDRETLEELS KEGVTLMMSD  120
STNILSPGRT ISESVVADAL LRRISAAKGR IITTQFASNI HRLGSVKAAA DLTGRKMVFV  180
GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS  240
SHALKLNKED VILYSAKVIP GNESRVMKMM NRISEIGSTI VMGRNELLHT SGHGYRGKLE  300
EVLRIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTTVIK NGEMLGVSHL RKRKVLSNGF  360
VSLGKENLQL MYNDGDKAFG TSTELCVDER LRIATDGIVV VSMEILRPQN ADGLVENSLK  420
GKIKITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLAH MERTVSEMLR KMVRKYSGKR  480
PEVIAIAVEN PVAVLSDELN EKLSGHSHAG LGISALRKTA DQHRKKNQVD RKQHGGNDYA  540
HLEKTSAKNS EVDGFKFERE LSKEEETSSS PSLAEGHSSN SKNQDNFRKS FVPPSSVHEL  600
VKSDENLVPP GEHVDKLKKD GTISSDDDLL ENQNSRSKRS EPVKRTKWKP EEVKSLIKLR  660
GELHSRFQVV RGRMALWEEI STNLMADGIN RSPGQCKYLW TSLAQKYEES KSDPKSQKSW  720
PYFEDMDNIL SDSETMATE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	6e-59	17	489	104	560	RIBONUCLEASE J
5a0t_B	6e-59	17	489	104	560	RIBONUCLEASE J
5a0v_A	6e-59	17	489	104	560	RIBONUCLEASE J
5a0v_B	6e-59	17	489	104	560	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0168s0020.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321691.2	0.0	uncharacterized protein LOC7463114
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	B9IF88	0.0	B9IF88_POPTR; Uncharacterized protein
STRING	POPTR_0015s10570.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0168s0020.3.p

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]