PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0168s0400.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 21957.5 Da    PI: 10.5434
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0168s0400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien+snrqvtfskRrng+lKKA+ELS+LC+aev++i+fs++gk++ ++s
  SapurV1A.0168s0400.2.p  9 KRIENSSNRQVTFSKRRNGLLKKAFELSILCEAEVSLIVFSPSGKFHQFAS 59
                            79***********************************************86 PP
2K-box66.96.7e-2380170898
                   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             ++ ++  e ++ e++ L+k i++ + ++Rh++Ged+e L lkeL+qLe+qL+++ ++iRskK++ + e+++ l+ k  +lq+en +L
  SapurV1A.0168s0400.2.p  80 DQRSRSLEFWKCEIEELRKTINKTEAQLRHFIGEDIELLGLKELKQLERQLKTGAERIRSKKKRAISEHVSLLKSKLSDLQKENARL 166
                             46777899******************************************************************************* PP

                   K-box  95 rkkl 98 
                             +k++
  SapurV1A.0168s0400.2.p 167 QKRV 170
                             9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.015161IPR002100Transcription factor, MADS-box
CDDcd002655.24E-36270No hitNo description
SuperFamilySSF554559.42E-32289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2183170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.75386176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRGKVELKR IENSSNRQVT FSKRRNGLLK KAFELSILCE AEVSLIVFSP SGKFHQFASH  60
DMERSVARYR SEVGRPGQND QRSRSLEFWK CEIEELRKTI NKTEAQLRHF IGEDIELLGL  120
KELKQLERQL KTGAERIRSK KKRAISEHVS LLKSKLSDLQ KENARLQKRV RFQNCHLKNC  180
VCVCVCVCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22190189MEF2 CHIMERA
6byy_B2e-22190189MEF2 CHIMERA
6byy_C2e-22190189MEF2 CHIMERA
6byy_D2e-22190189MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0168s0400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247950.0CU224795.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023983.11e-103PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1
TrEMBLA7Y7W61e-100A7Y7W6_POPDE; MADS-box protein
TrEMBLA9PA191e-100A9PA19_POPTR; Uncharacterized protein
STRINGVIT_17s0000g01230.t013e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-35AGAMOUS-like 20