PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0171s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 196aa    MW: 22011.2 Da    PI: 8.3793
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0171s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18129161133
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                             C++C++ kTp+WR gp+g+ktLCnaCG++y   
  SapurV1A.0171s0240.1.p 129 CVHCQVDKTPQWRAGPSGPKTLCNACGMRYSTG 161
                             ******************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.3E-14123173IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.71E-13127180No hitNo description
PROSITE profilePS5011411.016127158IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-15127161IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.21E-15128178No hitNo description
PfamPF003205.6E-16129160IPR000679Zinc finger, GATA-type
PROSITE patternPS003440129154IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MANEDEENIY NISDLFPLDG LDWIGSAELC VPQDPIEFVP SFPDFPGGLI STAELRLSED  60
FDFLRKSEGE KQTAPSKDCR IGITHKKPRS KRISKQRAWS VKDAMLSALE NHPDMISVSG  120
NEHFLLRKCV HCQVDKTPQW RAGPSGPKTL CNACGMRYST GKLLPEYRPA ASPTFDKIRH  180
SNFHKQILKK RANLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0171s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024457129.11e-69GATA transcription factor 7
TrEMBLA0A3N7FUH92e-69A0A3N7FUH9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06720.11e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1634779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-31GATA family protein