PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0173s0300.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 25184.4 Da    PI: 10.3721
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0173s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-25959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krie k+ rq+tfskRrng++KKA  LSvLCd++ a+++fsstgklye+s+
  SapurV1A.0173s0300.1.p  9 KRIEKKICRQITFSKRRNGLIKKARDLSVLCDVQLALLVFSSTGKLYEFST 59
                            79***********************************************96 PP
2K-box31.85.9e-12981612487
                   K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                              k+  e Lq   R +   + e+L+l +L+q e q++ +l++ R++K++l+le+++ l +k  +l
  SapurV1A.0173s0300.1.p  98 FKSCAELLQIVRRSFEDSNFEELTLSDLEQTEMQIDAALRHTRARKMQLMLESMNALHEKVWSL 161
                             5666788999999999999*************************************99997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.562161IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-27278IPR002100Transcription factor, MADS-box
CDDcd002653.28E-32273No hitNo description
PRINTSPR004043.9E-26323IPR002100Transcription factor, MADS-box
PfamPF003195.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.4587179IPR002487Transcription factor, K-box
PfamPF014869.2E-999161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSVLCD VQLALLVFSS TGKLYEFSTA  60
GSVAKILKRR RSHFEEKTAL SSGANDAELY HGKYEKTFKS CAELLQIVRR SFEDSNFEEL  120
TLSDLEQTEM QIDAALRHTR ARKMQLMLES MNALHEKVWS LFLYQTLLRN YQYSVITVSP  180
FKFRGKRKGN EKLIFTVSRN LYDIIPIVPL DYALFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16168168MEF2C
5f28_B8e-16168168MEF2C
5f28_C8e-16168168MEF2C
5f28_D8e-16168168MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772KRRRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0173s0300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452186.14e-91MADS-box transcription factor 14 isoform X2
TrEMBLA0A2K2B8F09e-88A0A2K2B8F0_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-38MIKC_MADS family protein