PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0173s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 191aa    MW: 21606.6 Da    PI: 6.7978
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0173s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.5e-188441551
                            HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             Rrng++KK   LSvLCd++va+++fsstgklye+s+
  SapurV1A.0173s0310.1.p  8 HRRNGLIKKVRDLSVLCDVQVALLVFSSTGKLYEFST 44
                            7**********************************96 PP
2K-box41.84.7e-15811582299
                   K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             +k k+  e L+  +R +   + e+L+l +L+q e q++ +l++ R++K++l+le+++ l +k + l+een+ L++++ 
  SapurV1A.0173s0310.1.p  81 KKFKSCAELLRIIHRSFEDSNFEELTLSDLEQTEMQIDAALRHTRARKMQLMLESMNALHEKVETLREENQLLQTQVS 158
                             5788899999999*************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.79E-17763IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-14823IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-8945IPR002100Transcription factor, MADS-box
PfamPF003195.7E-15942IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.577946IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-142344IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.54873163IPR002487Transcription factor, K-box
PfamPF014861.5E-1182157IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.1705.6E-4122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNASDLWHRR NGLIKKVRDL SVLCDVQVAL LVFSSTGKLY EFSTAGSVAK ILKRRRSHFE  60
EKAALSNGAN DAELYHGKYE KKFKSCAELL RIIHRSFEDS NFEELTLSDL EQTEMQIDAA  120
LRHTRARKMQ LMLESMNALH EKVETLREEN QLLQTQVSAM NNSFETNGMV PGSFEPPSGF  180
PQEQATLSLL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257KRRRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0173s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452186.15e-94MADS-box transcription factor 14 isoform X2
TrEMBLA0A2K2B8F17e-92A0A2K2B8F1_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.12e-29MIKC_MADS family protein