PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0173s0320.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 68aa MW: 7705.22 Da PI: 11.0699

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0173s0320.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.8	1e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie k+ rq+tfskRrng++KKA LSvLCd++ a+++fsstgklye+s+ SapurV1A.0173s0320.1.p 9 KRIEKKICRQITFSKRRNGLIKKARDLSVLCDVQLALLVFSSTGKLYEFST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.562	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.8E-27	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.7E-34	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MGRKKVELKR IEKKICRQIT FSKRRNGLIK KARDLSVLCD VQLALLVFSS TGKLYEFSTA 60 GRFVESL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-17	1	60	1	60	MEF2C
5f28_B	2e-17	1	60	1	60	MEF2C
5f28_C	2e-17	1	60	1	60	MEF2C
5f28_D	2e-17	1	60	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269\|PubMed:19820190}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0173s0320.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452188.1	4e-34	MADS-box transcription factor 14 isoform X4
Refseq	XP_024452189.1	4e-34	MADS-box transcription factor 14 isoform X5
Swissprot	Q7XUN2	1e-25	MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBL	A0A2K2B8E7	9e-33	A0A2K2B8E7_POPTR; Uncharacterized protein
TrEMBL	A0A2K2B8F0	9e-33	A0A2K2B8F0_POPTR; Uncharacterized protein
STRING	POPTR_0003s16820.1	6e-31	(Populus trichocarpa)
STRING	POPTR_0003s16850.1	6e-31	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.4	1e-27	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0173s0320.1.p

Publications ? help Back to Top
Duan Y, et al. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Mol. Biol., 2012. 80(4-5): p. 429-42 [PMID:22933119] Hu Y, et al. Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758] Bai X, et al. Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice. Sci Rep, 2016. 6: p. 19022 [PMID:26744119]