PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0174s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 126aa    MW: 14466.9 Da    PI: 10.6237
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0174s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.7e-13586283
                            EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                             k lt+ d +  +rl+lp kf++     +g++ +  +l+  desg +W+++++ rkk+    vl+kGW  F++ ++Lk gD v F 
  SapurV1A.0174s0200.1.p  5 SKLLTKTDIH--KRLSLPTKFFKPPpsfKGSHVQ--DLQAIDESGFVWTFQCSTRKKGHPkPVLSKGWLAFARHKELKNGDRVKFF 86
                            5555444444..46********666988667666..7***************765554447********************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.8392102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-15490IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13490IPR015300DNA-binding pseudobarrel domain
CDDcd100177.66E-15489No hitNo description
SMARTSM010190.00144102IPR003340B3 DNA binding domain
PfamPF023622.5E-9686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAEFSKLLTK TDIHKRLSLP TKFFKPPPSF KGSHVQDLQA IDESGFVWTF QCSTRKKGHP  60
KPVLSKGWLA FARHKELKNG DRVKFFKEKH QIVPATPLYR IETEREIKIF GVIFGYSPIV  120
APFHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0174s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025074.12e-70PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9I5A21e-70B9I5A2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02070.12e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778