PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0174s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 75aa    MW: 8478.87 Da    PI: 8.4948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0174s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.3e-121603996
                            EETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                      B3 39 edesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                            +de g +W++++ y++  g+   vl+kGW eFv++++L++gD++ F++ ++   +e  vk+
  SapurV1A.0174s0220.1.p  1 MDEGGFVWTFRC-YTREEGHpkPVLSKGWLEFVRSKKLQVGDTIRFSVLDQtVLRENEVKI 60
                            589999******.7666666789************************55443666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023621.5E-9160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-11160IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-11145No hitNo description
PROSITE profilePS5086310.673168IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-11151IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MDEGGFVWTF RCYTREEGHP KPVLSKGWLE FVRSKKLQVG DTIRFSVLDQ TVLRENEVKI  60
YGAIFGPIIV PPVP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0174s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010225.11e-24PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DYN24e-22U7DYN2_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00220.17e-23(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778