PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0175s0160.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 213aa MW: 24354.5 Da PI: 7.2958

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0175s0160.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73	2.5e-23	25	71	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kr+e +snr+vtfskR+ng++KKA ELS+LC+ae aviifs++ kl+ SapurV1A.0175s0160.2.p 25 KRVERESNRYVTFSKRKNGLFKKATELSTLCGAETAVIIFSEHRKLF 71 78999*************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.3E-29	17	76	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.553	17	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.79E-27	18	90	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.61E-33	18	86	No hit	No description
PRINTS	PR00404	1.2E-20	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-22	26	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-20	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDAANSNQQQ ETRRTSKGRQ KIEIKRVERE SNRYVTFSKR KNGLFKKATE LSTLCGAETA 60 VIIFSEHRKL FSCGQPDVDQ VLDRYLAETE RAPNNFPSLI KNNVENQLAN KQEYAESLKR 120 LEEEQTVAKM IGSMDNMNGG GFWWDLPIDN MEQDELEAYR ESMEKLKKNL IARLGLIEST 180 CNALTESRIA NPFINLKEIP SSLSFNSHQC RQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	3e-18	18	87	1	70	Myocyte-specific enhancer factor 2A
3mu6_B	3e-18	18	87	1	70	Myocyte-specific enhancer factor 2A
3mu6_C	3e-18	18	87	1	70	Myocyte-specific enhancer factor 2A
3mu6_D	3e-18	18	87	1	70	Myocyte-specific enhancer factor 2A
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0175s0160.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323594.2	1e-125	agamous-like MADS-box protein AGL62
Refseq	XP_024443414.1	1e-125	agamous-like MADS-box protein AGL62
Refseq	XP_024443416.1	1e-125	agamous-like MADS-box protein AGL62
TrEMBL	A0A3N7G457	1e-124	A0A3N7G457_POPTR; Uncharacterized protein
STRING	POPTR_0016s12640.1	1e-125	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-33	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	SapurV1A.0175s0160.2.p