PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0175s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 212aa    MW: 24229.7 Da    PI: 5.188
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0175s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF741.2e-232571147
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                            kr+e +snr+vtfskR+ng++KKA ELS+LC+ae aviifs++ kl+
  SapurV1A.0175s0190.1.p 25 KRVEKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIIFSEQRKLF 71
                            799****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-301776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.7211777IPR002100Transcription factor, MADS-box
CDDcd002655.09E-341886No hitNo description
SuperFamilySSF554555.49E-271889IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-211939IPR002100Transcription factor, MADS-box
PfamPF003191.1E-222672IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-213954IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-215475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDAANQQQQQ ETRRTSKGRQ KIEIKRVEKE SNRYVTFSKR KNGLFKKATE LSTLCGAETA  60
VIIFSEQRKL FSCGQPDVDQ VLDRYLAETE RVPNNFPSLI KNNVENQLAN KQEYAESLKR  120
LEEEQTVAKM IGSMNNMNGG GFWWDLPIDN MEQDELEAYR ESMEQLKKNL IARLGLIEST  180
CNALTLIVIN VNDGFMCSLI LFTFVSNLLI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A4e-181887170Myocyte-specific enhancer factor 2A
3mu6_B4e-181887170Myocyte-specific enhancer factor 2A
3mu6_C4e-181887170Myocyte-specific enhancer factor 2A
3mu6_D4e-181887170Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0175s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004765.11e-112PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2K1XEI51e-111A0A2K1XEI5_POPTR; Uncharacterized protein
STRINGPOPTR_0016s12640.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-32AGAMOUS-like 62