PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0176s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 510aa    MW: 56086.6 Da    PI: 8.7453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0176s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005444466123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp C+k+F++   L  H r+H
  SapurV1A.0176s0170.1.p 444 HECPFCPKVFRSGQALGGHKRSH 466
                             78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.4E-8831No hitNo description
PROSITE profilePS501579.203936IPR007087Zinc finger, C2H2
SMARTSM003550.31931IPR015880Zinc finger, C2H2-like
PfamPF139129.6E-5927IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.4E-889116No hitNo description
PROSITE profilePS501578.91294117IPR007087Zinc finger, C2H2
SMARTSM003551.594116IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
PfamPF139121.5E-696118IPR007087Zinc finger, C2H2
SuperFamilySSF576678.81E-5442467No hitNo description
PfamPF139123.7E-10443466IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39444466IPR007087Zinc finger, C2H2
SMARTSM003550.016444466IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280446466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
METNQKNSFV CKYCNKRYPC GKSLGGHIRI HLNGNGTCST DEDAKDKIST TESKSKQSSV  60
SEAGGQFGYV LRENPKKTTR FVADSSNTTS LPEKLCKECG KGFQSLKALC GHMACHSKNF  120
FQDQSGATEK LKEIIMDKQS DSETTDPIER RRSKRMRYKA IDVYSSSFSL TNTASLSSTS  180
DIEQEQEEMA ICLMMLSKDS GFKGCFSSVA DSSENNSVVL EGKSSFMKMR INVDDGINFV  240
SSGIESLGKK KATQKGVNSA ENDQSENSDS GYFRNGPKKV ESDASVHGFA GNVEFKKQKV  300
DFVSSYDDDL DAESGRRLRK SRHMKTQSGK DFIEEDVYNQ ADRALMDSKK KCKNESSEYL  360
GSSARNRGSK CVSLGGRRTS HNRIKGCSDS IYESGENSVD ADYVPNPVAN TSRMIHSRRE  420
KTPTEKNSSG KAEKKMGLKI GKVHECPFCP KVFRSGQALG GHKRSHFIGA ARGRTVVIEQ  480
DGPAISMRGQ IDLNLPVSME EESDGLGPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0176s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311333.20.0uncharacterized protein LOC7471050
TrEMBLB9HID50.0B9HID5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-88C2H2-like zinc finger protein