PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0177s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 652aa    MW: 71750.6 Da    PI: 8.4727
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0177s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08536584348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v ++G g+W+ I r +      Rt  ++k++w+++l
  SapurV1A.0177s0370.1.p 536 AWTLCEVMKLVEGVSRYGAGRWSEIKRLVFasySYRTSVDLKDKWRNLL 584
                             7********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.184529588IPR017930Myb domain
SuperFamilySSF466896.71E-16531597IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-12531590IPR009057Homeodomain-like
SMARTSM007172.7E-8533586IPR001005SANT/Myb domain
CDDcd116603.33E-18535585No hitNo description
PfamPF002492.2E-6536584IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
METEVGVEGN DEAKLKECEI RKSSSSLSSP KQISDPVVYK LVRVEGDGRL VPATEDELME  60
VESLLIDDRC GMHIDADPGQ TIGCISNEGS SSWMAQLESL EGLSQPKSKK VDPDKLNGRL  120
EYIEEMLQKV KEEERLHIAC GSPDCSSACV IVDSQCSDPH DKLLHIDEKL QSEIPLQEPV  180
PSLAPSLRES NLNQSGSVGE LVAGGSPLSV TTKPDFSILK GEICLDNLSI KELHETFKAT  240
FGRETTVKDK QWLKRRISMG LTNSCAASTN FIIKDNKFAK RGNEEGCNGM YGSFAKDPSI  300
VNQKGLPTCL VGQLDYHKVV PERRLENHNI DDYSGSDDHK NEQRAAKRVR KPTKRYIEEF  360
SEVESKESSG RLLNLAKNSG HGLISPKSHV RLVRNVSSGG RTVVTRLDSL GGSGIQVPCV  420
SRVRRSRPRK NFMALLKFNP SGMGMAATLV KKALDDHSFP PDDGNENRVL KASSTPEHVH  480
HLFVGMPEKG KQFSVMSAVG LGNNMEMKMN SSGDSDDNVV TVPTSKGGVR RKHHRAWTLC  540
EVMKLVEGVS RYGAGRWSEI KRLVFASYSY RTSVDLKDKW RNLLKASFTQ TPPDTGMNSR  600
KNTGAMPIPT PILLKVRELA EMQAQAPPNL SSTKVAGSTR KIVHEKQTGF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423429RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0177s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-132CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-132CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-132CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298100.20.0uncharacterized protein LOC7478109 isoform X2
TrEMBLB9GKV60.0B9GKV6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-124TRF-like 6