PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0177s0370.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 596aa    MW: 65416.4 Da    PI: 9.59
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0177s0370.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08480528348
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                             +WT  E  +lv++v ++G g+W+ I r +      Rt  ++k++w+++l
  SapurV1A.0177s0370.2.p 480 AWTLCEVMKLVEGVSRYGAGRWSEIKRLVFasySYRTSVDLKDKWRNLL 528
                             7********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.184473532IPR017930Myb domain
SuperFamilySSF466895.93E-16475541IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-12475534IPR009057Homeodomain-like
SMARTSM007172.7E-8477530IPR001005SANT/Myb domain
CDDcd116603.92E-18479529No hitNo description
PfamPF002491.9E-6480528IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
METEVGVEGN DEAKLKECEI RKSSSSLSSP KQISDPVVYK LVRVEGDGRL VPATEDELME  60
VESLLIDDRC GMHIDADPGQ TIGCISNEGS SSWMAQLESL EGLSQPKSKK VDPDKLNGRL  120
EEPVPSLAPS LRESNLNQSG SVGELVAGGS PLSVTTKPDF SILKGEICLD NLSIKELHET  180
FKATFGRETT VKDKQWLKRR ISMGLTNSCA ASTNFIIKDN KFAKRGNEEG CNGMYGSFAK  240
DPSIVNQKGL PTCLVGQLDY HKVVPERRLE NHNIDDYSGS DDHKNEQRAA KRVRKPTKRY  300
IEEFSEVESK ESSGRLLNLA KNSGHGLISP KSHVRLVRNV SSGGRTVVTR LDSLGGSGIQ  360
VPCVSRVRRS RPRKNFMALL KFNPSGMGMA ATLVKKALDD HSFPPDDGNE NRVLKASSTP  420
EHVHHLFVGM PEKGKQFSVM SAVGLGNNME MKMNSSGDSD DNVVTVPTSK GGVRRKHHRA  480
WTLCEVMKLV EGVSRYGAGR WSEIKRLVFA SYSYRTSVDL KDKWRNLLKA SFTQTPPDTG  540
MNSRKNTGAM PIPTPILLKV RELAEMQAQA PPNLSSTKVA GSTRKIVHEK QTGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367373RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0177s0370.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-132CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-132CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-132CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035704.10.0PREDICTED: uncharacterized protein LOC105133411 isoform X2
TrEMBLA0A2K2BZ220.0A0A2K2BZ22_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-112TRF-like 6