PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0185s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 389aa    MW: 44145.8 Da    PI: 6.8818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0185s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.8e-09425325
                            S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                            +++C++fa+ G C++Gd CkF H
  SapurV1A.0185s0180.1.p  4 RKPCKYFAQ-GACWRGDHCKFVH 25
                            79*******.************* PP
2zf-CCCH231.4e-074059626
                            -SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                            C f+++ G C yG+rCk+ H+
  SapurV1A.0185s0180.1.p 40 CTFYQK-GNCTYGSRCKYEHV 59
                            9*****.***********997 PP
3zf-CCCH22.52e-07102125226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++lC+ f   G C++Gd+C+F Hg
  SapurV1A.0185s0180.1.p 102 DRPLCS-FDVAGDCPHGDKCSFFHG 125
                             689***.***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.432128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5227IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-7430IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-63458IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-63460IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2443461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-43958IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-54059IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.098100127IPR000571Zinc finger, CCCH-type
SMARTSM003560.12101126IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4102125IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.21E-13160229No hitNo description
Gene3DG3DSA:3.30.40.109.5E-11162226IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.49E-4168225No hitNo description
PfamPF000974.4E-5169222IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.9E-7169222IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.15169223IPR001841Zinc finger, RING-type
PROSITE patternPS005180193202IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010311.779252281IPR000571Zinc finger, CCCH-type
SMARTSM003560.72253280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSQRKPCKYF AQGACWRGDH CKFVHERKEP QPLSRNVMVC TFYQKGNCTY GSRCKYEHVK  60
SSWVASGGAA GASSSSMSPH QSVILSSVPA CAVSSRNSKK EDRPLCSFDV AGDCPHGDKC  120
SFFHGDLCPT CGKHSLHPFR ADEREEHLKS CEKNQKFHVA VKQSEEIECC VCLDRVLSKP  180
TAAERKFAVL PECDHPFCIS CIRNWRNGSP ASGMALRACP ICRKTSHFVI PSLIWYSSKE  240
EKQEIIDTYK ARLRKIDCKH FNFGNGNCPF SINCFYKHTV MPGSYTWKHH KPPPRRPPPR  300
RRSNAGHMDS SFDYLGPAME DLLDLFDDDY LDYDNYCDPF HEGYQLDIFD YEDYFEEEHL  360
SPFDMALLLA GMDCGGASDI SSDEDDFY*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0185s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455056.10.0E3 ubiquitin-protein ligase makorin isoform X1
SwissprotQ6IDS61e-107C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K2AU450.0A0A2K2AU45_POPTR; C3H family protein
STRINGPOPTR_0004s14200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-107C3H family protein