PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0186s0560.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 169aa    MW: 18246.1 Da    PI: 10.693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0186s0560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.13.2e-203368136
                    GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36
                            C+ C+ttkTplWR gp g+k+LCnaCG++yrkk+++
  SapurV1A.0186s0560.1.p 33 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRTM 68
                            *********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.8E-172778IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-163167IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.18E-143175No hitNo description
CDDcd002021.45E-143277No hitNo description
PROSITE profilePS5011412.4533363IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
PfamPF003204.9E-183368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MGVIMDLKGR KSSREDDRSG GGVSGEVVDK KACTDCKTTK TPLWRGGPAG PKSLCNACGI  60
RYRKKRTMMR LEKGSEKKRA TTATSNTTTA TDISTITTAT TTNTAQAVSG NGLISESLRM  120
SLMVLGEEMM LQRPSVVKKQ RCQRKRKLRE EEQAAFSLMA LSCASVFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0186s0560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006382425.14e-81GATA transcription factor 16
TrEMBLB9N4N61e-79B9N4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0005s02040.12e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-17GATA transcription factor 15