PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0187s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 8020.52 Da PI: 11.0949

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0187s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	11	61	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+eys+ SapurV1A.0187s0010.1.p 11 KKIDNTAARQVTFSKRRRGLFKKAYELSTLCDAEIALMVFSATGKLFEYSN 61 68***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.15E-28	3	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.338	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-38	3	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-28	5	25	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	5	59	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-26	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-28	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.3E-28	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MKMTRKKIQI KKIDNTAARQ VTFSKRRRGL FKKAYELSTL CDAEIALMVF SATGKLFEYS 60 NSRKLKDKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-20	3	62	1	60	MEF2C
5f28_B	2e-20	3	62	1	60	MEF2C
5f28_C	2e-20	3	62	1	60	MEF2C
5f28_D	2e-20	3	62	1	60	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0187s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144739	1e-51	EF144739.1 Populus trichocarpa clone WS01117_K02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380343.1	4e-36	MADS-box protein JOINTLESS isoform X1
Swissprot	Q9FUY6	4e-28	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	U5G411	8e-35	U5G411_POPTR; Uncharacterized protein
STRING	POPTR_0007s03270.1	6e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	3e-30	AGAMOUS-like 24

Link Out ? help Back to Top
Phytozome	SapurV1A.0187s0010.1.p

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]