PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0160.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 359aa    MW: 40434.8 Da    PI: 4.7707
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0160.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43e-16203239135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cgt+   Tp +Rrgp g++tLCnaCGl+++ kg+
  SapurV1A.0187s0160.4.p 203 CQHCGTSAkeTPAMRRGPAGPRTLCNACGLMWANKGT 239
                             ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.10166101IPR010399Tify domain
SMARTSM009798.0E-566101IPR010399Tify domain
PfamPF062006.1E-870100IPR010399Tify domain
PROSITE profilePS5101713.066134176IPR010402CCT domain
PfamPF062031.4E-15134175IPR010402CCT domain
SMARTSM004014.7E-11197250IPR000679Zinc finger, GATA-type
CDDcd002022.02E-16202246No hitNo description
SuperFamilySSF577161.95E-11202251No hitNo description
Gene3DG3DSA:3.30.50.109.9E-15202244IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
PfamPF003205.7E-14203239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVKKMEMVNP QRHKKVRKGR DYHNRRAMQI EGGDFDYGYG FDDGMISANN NINGVVINNG  60
NDSVFESTRT SELTIAFEGE VYVFPAVTPS KVQAVLFLLG EPETSTIAPS SEFLLQQNAR  120
SAGDASQGLK HSRRVASLVR FREKRKERCF EKKVRYTCRK EVAQRMHRKK GQFASLNDCY  180
GTDTGNWEPN NGMPNPEFDL LRCQHCGTSA KETPAMRRGP AGPRTLCNAC GLMWANKGTL  240
RDLNKGGRQI SINQNELVTP DFKPSTIERE NPFDNPDEEE SQEESKPVPL DSDNSQRPNE  300
QDLLETDETV PDPLPMHVEN SSTNLDDEDF ENTLDELGDV SGSEFEIPEH FDDQVVFF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0160.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166019e-50AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380338.20.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL75e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1ZSZ90.0A0A2K1ZSZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03120.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-48ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]