PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 113aa    MW: 12650.6 Da    PI: 7.2533
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.86.9e-1236973290
                            --SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                      B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                            + +    +d++gr+We+kl+ r++++    v+++ W ++v ++gLk+gDf++++++++ +++
  SapurV1A.0187s0360.1.p 36 NAINFNARDPTGRVWEFKLCTRNHGRYrkPVIRGDWLGYVGEKGLKVGDFIILTMVEDaENG 97
                            34567889***********98666655679************************88775544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-10595IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-11696IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-14793No hitNo description
PfamPF023621.1E-83896IPR003340B3 DNA binding domain
PROSITE profilePS508638.61443106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MDIELVKKTL TTSDIASCLA YPTGNLWAFQ MVPGQNAINF NARDPTGRVW EFKLCTRNHG  60
RYRKPVIRGD WLGYVGEKGL KVGDFIILTM VEDAENGVSY NIRVEPNLEL AM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.14e-59PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE558e-61B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.11e-61(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313