PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0390.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GeBP
Protein Properties Length: 439aa    MW: 48302.8 Da    PI: 4.447
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0390.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57393.32.6e-2992180997
                  DUF573   9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                             +  eiv+L G++++++++gksp++d  +f+ fvk+s+++++++sq+++KirrLK K+ ++v+k +++ +  fsk+hd+++ elskki
  SapurV1A.0187s0390.1.p  92 KPNEIVMLNGMVEYQSEKGKSPFADNGDFHGFVKESLHVDATNSQFLDKIRRLKTKYFTDVEKNEKEIDEIFSKPHDSECVELSKKI 178
                             667************************************************************99********************** PP

                  DUF573  96 Wg 97 
                             Wg
  SapurV1A.0187s0390.1.p 179 WG 180
                             *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-2591180IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MARRRPFEDA PPAVSSSEDE EETDDEEETP KSAVQAQHNG TGEKQNDNEN GSEEEEDDDD  60
DDDDEEEKEK PNLPPSKPSK PDSESDSETD SKPNEIVMLN GMVEYQSEKG KSPFADNGDF  120
HGFVKESLHV DATNSQFLDK IRRLKTKYFT DVEKNEKEID EIFSKPHDSE CVELSKKIWG  180
AGSIEVGKKG NMNKKSGKNV SSGGGGGEGE GEGGGGMELT LGLAKQGSEE ANGEKGKLSV  240
RKGRRGSNEE VKVEGNEGNL KKQRQVLDEA DEGEAGNVKK GKRGLSEKVN GEGKGKGGKR  300
EQRSSDEEMS GEGEEVNMTV KKQRRLVNDE MNGGGMELSV KKRNAVANEE LDKEEAGSED  360
LWDKYPYLRS SLDGENLSGD VKERTMLMLG MAEEEKLAEL EREWRSLMKA KLEFIVMQKD  420
LIAKQIKLSL DAMNSHGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0390.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309849.20.0GLABROUS1 enhancer-binding protein-like 1
TrEMBLB9HE520.0B9HE52_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2065435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-17DNA-binding storekeeper protein-related transcriptional regulator