PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0187s0430.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 114aa MW: 12886.8 Da PI: 5.1048

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0187s0430.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.9	5.6e-11	37	98	32	90
--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + +t +d++gr+We+kl+ r+++ v+++ W ++v+++gL +gD+++++++++ +++ SapurV1A.0187s0430.1.p 37 NAITFNARDPTGRVWEFKLCTRNHGPYkkPVIRGDWLDYVREKGLTVGDVIILTMVEDaENG 98 45788999*********88666544569**********************88775544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-10	30	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-11	30	97	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.52E-12	33	94	No hit	No description
Pfam	PF02362	9.7E-8	38	97	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.515	44	107	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MAQIDIVNKD LTFYDITQCF AYPACSLWAF PMGRGQNAIT FNARDPTGRV WEFKLCTRNH 60 GPYKKPVIRG DWLDYVREKG LTVGDVIILT MVEDAENGVS YNIRVEPNLE LAI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0187s0430.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011003253.1	2e-53	PREDICTED: uncharacterized protein LOC105110050
TrEMBL	B9HE55	9e-57	B9HE55_POPTR; Uncharacterized protein
STRING	POPTR_0007s02840.1	2e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14473	3	13

Link Out ? help Back to Top
Phytozome	SapurV1A.0187s0430.1.p