PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0188s0290.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 413aa MW: 44533.5 Da PI: 7.219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0188s0290.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	322	360	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq SapurV1A.0188s0290.2.p 322 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 360 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.166	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-5	320	364	No hit	No description
SuperFamily	SSF47459	6.67E-10	320	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-9	324	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MESANLHHQH QLQDQYFAGS SSLTTNTTPS SYAESGSARA WTQTTTLNSG NSGPNSNGVI 60 FNQRQKNESP IPSLNSAMFQ DLGLQYWNNN AGNFSSQSAY DLQLSKIKEE LSSSDSFPKF 120 TEMLNSPSST IEDPLLSSSS YIKDEQTNLS LSEKLLLKTI SSGFPINGHD QFSTRQIPSS 180 HHNCSSFGSA VPSRGSFSQI YPSINISNFN QPSSPLIPGS LDMNLQALDL LTSTRFSGSF 240 PHPASLDPLD MFKDSLSFGF DSMQHSNQRP ACSPNKISSA NEKIAEAKRP NNSLMEPKVT 300 QAAAPKKSKL ESRAPCPPLK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ 360 NQVEASNSGG EESKRDLRSR GLCLVPLSCM SYVTTDGGGG GIWPPPNFGG GT*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MESANLHHQH QLQDQYFAGS SSLTTNTTPS SYAESGSARA WTQTTTLNSG NSGPNSNGVI  60
FNQRQKNESP IPSLNSAMFQ DLGLQYWNNN AGNFSSQSAY DLQLSKIKEE LSSSDSFPKF  120
TEMLNSPSST IEDPLLSSSS YIKDEQTNLS LSEKLLLKTI SSGFPINGHD QFSTRQIPSS  180
HHNCSSFGSA VPSRGSFSQI YPSINISNFN QPSSPLIPGS LDMNLQALDL LTSTRFSGSF  240
PHPASLDPLD MFKDSLSFGF DSMQHSNQRP ACSPNKISSA NEKIAEAKRP NNSLMEPKVT  300
QAAAPKKSKL ESRAPCPPLK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  360
NQVEASNSGG EESKRDLRSR GLCLVPLSCM SYVTTDGGGG GIWPPPNFGG GT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0188s0290.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024456318.1	0.0	transcription factor bHLH110 isoform X2
TrEMBL	A0A3N7EZW1	0.0	A0A3N7EZW1_POPTR; Uncharacterized protein
STRING	POPTR_0005s25240.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	4e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0188s0290.2.p