PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0191s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 374aa    MW: 41043.6 Da    PI: 5.4715
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0191s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-051860440
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                            r+C+++     + +C+ ++ +lC  C    H        H++v
  SapurV1A.0191s0260.1.p 18 RVCDTCRAAACTVYCQADSAYLCTGCDARVHAAnrvasrHERV 60
                            79******99******************999556677778766 PP
2zf-B_box28.33.6e-0960105342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              r+C+ +e+ ++ l C+ +   lC  C   +H+       H++vp+
  SapurV1A.0191s0260.1.p  60 VRVCEACERAPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 105
                             689*****************************66899999**9997 PP
3CCT68.51.7e-23304347144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SapurV1A.0191s0260.1.p 304 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 347
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6511562IPR000315B-box-type zinc finger
SMARTSM003361.9E-71562IPR000315B-box-type zinc finger
CDDcd000213.47E-71862No hitNo description
PROSITE profilePS5011911.63358105IPR000315B-box-type zinc finger
PfamPF006432.9E-760105IPR000315B-box-type zinc finger
CDDcd000214.61E-961105No hitNo description
SMARTSM003363.8E-1063105IPR000315B-box-type zinc finger
PROSITE profilePS5101716.569304346IPR010402CCT domain
PfamPF062032.4E-17304346IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MLKEEDGGGG RGVNNWARVC DTCRAAACTV YCQADSAYLC TGCDARVHAA NRVASRHERV  60
RVCEACERAP AALLCKADAA SLCTACDADI HSANPLARRH QRVPILPISG CLYGAKAGHA  120
AGETEDQFMT PEGEETTGEE DEEEAASWLL LNPAKNSSTN QNNNGFLFGG EVDDYLDIVE  180
FNSRAENQYS DQCNQQHYSA PPKSYGGDSV VPIQYGEGKD HQQRQQPQYH NFQLGLEYEP  240
AKAAYSYDCS ISQSVSMSSM DGVVVPESTT SEISVSHQGP TKGTIDLFSS PPIQMPSQLS  300
PMEREARVLR YREKKKARKF EKTIRYASRK AYAETRPRIK GRFAKRTDVD VEVDQMFSSA  360
LMAETGYGIV PSF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0191s0260.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151500.0AY515150.1 Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021143.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
RefseqXP_011039781.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-149COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ6R3R20.0Q6R3R2_POPDE; CONSTANS-like protein CO1
STRINGPOPTR_0017s14410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-127CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]