PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0198s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 180aa    MW: 21036.7 Da    PI: 8.6681
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0198s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-1991145256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ ++tk+q   Lee F++++ ++ +++  LA++l+L+ rqV vWFqNrRa+ k
  SapurV1A.0198s0140.1.p  91 RKKLRLTKDQSSYLEETFQRHPALNPAKKHALAEQLNLKPRQVEVWFQNRRARTK 145
                             678899***********************************************98 PP
2HD-ZIP_I/II120.67.9e-3991179189
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rl+k+q++ LEe+F+++  L+p +K++la++L+l+prqv+vWFqnrRARtk+kq+E dye+Lkr++++l++en+rL++ev+eL
  SapurV1A.0198s0140.1.p  91 RKKLRLTKDQSSYLEETFQRHPALNPAKKHALAEQLNLKPRQVEVWFQNRRARTKLKQTEADYEVLKRCCESLSNENRRLKREVQEL 177
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 re 89 
                             r+
  SapurV1A.0198s0140.1.p 178 RS 179
                             97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1982148IPR009057Homeodomain-like
PROSITE profilePS5007117.15187147IPR001356Homeobox domain
SMARTSM003893.8E-1689151IPR001356Homeobox domain
PfamPF000461.1E-1691145IPR001356Homeobox domain
CDDcd000869.17E-1591148No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1896145IPR009057Homeodomain-like
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PfamPF021835.9E-11147179IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.6E-9147180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEEDGYCNTK LGLGLGGETY VPWPPQKQKE KPVVRLDLSF TLCPDQQDSM KIDCHGKAEG  60
TRFRSEEDEE CGNKKRSDRS IDNSCMYDAG RKKLRLTKDQ SSYLEETFQR HPALNPAKKH  120
ALAEQLNLKP RQVEVWFQNR RARTKLKQTE ADYEVLKRCC ESLSNENRRL KREVQELRSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0198s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308994.11e-109homeobox-leucine zipper protein HAT9
SwissprotQ01I234e-41HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
SwissprotQ0JB924e-41HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLB9HAM61e-108B9HAM6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07100.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-42homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]