PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0199s0230.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 613aa MW: 70648 Da PI: 8.6689

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0199s0230.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.3	4.6e-22	50	133	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH SapurV1A.0199s0230.3.p 50 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLADSKRWRVLEVMLEHNH 131 69***************************************9988.....99******************************* PP FAR1 88 el 89 +l SapurV1A.0199s0230.3.p 132 SL 133 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-19	50	133	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.3E-29	252	345	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	539	575	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.9E-4	549	571	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	550	577	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MAEAGCSNER VTNGELNERE KELDDETGEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG 60 FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW 120 RVLEVMLEHN HSLGVKKYRP VKKVSTGNKR KSLSSSDAEG RTIKLYRALV IDSEGNGKSS 180 LNARDVMNSS EHPDQLNLKR GDAQAIYNYF CRMQLTNPNF FYLMDLNDEG HLRNVFWVDA 240 RSRVSCGYFG DVVYIDNTYL LSKFEIPLVA FVGMNHHSHS VLLGCGLLAG ETTESYIWLF 300 KAWITCMSGS SPQTIITDRC RTLQDAIAEA FPRAHHCFGL SHIMKRVPEK LGGLRHYDAL 360 KKTFMKAVYD TLKVIEFEAA WGFMVQRFGV GNHEWLQSLY EDRVRWVPVY LKDTVFAGMS 420 AARPGEILNP FFERYVHKQT PLKEFLDKFE LALQKKHKEE TLADIESRTV SPALKTRCSF 480 ELQLSKMYSK EIFKKFQFEV EEMYSCFSTT QIHADRPIII FLVKERVMGE SSRREIRDYE 540 VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP CQSPSKGNER HLILMTSRAA 600 DVLTSIKLSL QN*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MAEAGCSNER VTNGELNERE KELDDETGEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG  60
FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW  120
RVLEVMLEHN HSLGVKKYRP VKKVSTGNKR KSLSSSDAEG RTIKLYRALV IDSEGNGKSS  180
LNARDVMNSS EHPDQLNLKR GDAQAIYNYF CRMQLTNPNF FYLMDLNDEG HLRNVFWVDA  240
RSRVSCGYFG DVVYIDNTYL LSKFEIPLVA FVGMNHHSHS VLLGCGLLAG ETTESYIWLF  300
KAWITCMSGS SPQTIITDRC RTLQDAIAEA FPRAHHCFGL SHIMKRVPEK LGGLRHYDAL  360
KKTFMKAVYD TLKVIEFEAA WGFMVQRFGV GNHEWLQSLY EDRVRWVPVY LKDTVFAGMS  420
AARPGEILNP FFERYVHKQT PLKEFLDKFE LALQKKHKEE TLADIESRTV SPALKTRCSF  480
ELQLSKMYSK EIFKKFQFEV EEMYSCFSTT QIHADRPIII FLVKERVMGE SSRREIRDYE  540
VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP CQSPSKGNER HLILMTSRAA  600
DVLTSIKLSL QN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0199s0230.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385298.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	B9MWN4	0.0	B9MWN4_POPTR; Uncharacterized protein
STRING	VIT_09s0002g07400.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	SapurV1A.0199s0230.3.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]