PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0200s0040.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32965.9 Da PI: 6.4018

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0200s0040.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.2	2.9e-18	84	137	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA++lgL+ rq+ +WFqNrRa++k SapurV1A.0200s0040.2.p 84 KKRRLSVEQVKTLEKNFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWK 137 456899***********************************************9 PP
2	HD-ZIP_I/II	130.6	6.1e-42	83	173	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ekkrrls eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlE dy+ Lkr++da+k+en++L++++++L SapurV1A.0200s0040.2.p 83 EKKRRLSVEQVKTLEKNFELGNKLEPERKMQLARSLGLQPRQIAIWFQNRRARWKTKQLEIDYDLLKRQFDAVKAENNALQTQNQKL 169 69************************************************************************************* PP HD-ZIP_I/II 88 reel 91 ++e+ SapurV1A.0200s0040.2.p 170 HAEI 173 *987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-19	62	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.52E-20	66	141	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	79	139	IPR001356	Homeobox domain
SMART	SM00389	8.7E-18	82	143	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-15	84	137	IPR001356	Homeobox domain
CDD	cd00086	3.36E-16	84	140	No hit	No description
PRINTS	PR00031	6.6E-6	110	119	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	114	137	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.6E-6	119	135	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.8E-14	139	180	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MTCNGMAFFP TNFMIQSSHD QDDHQPPASL NPILPSCSPR DFHGVASFLG KRPSMSFSGI 60 DVCHEDQGNG DDELSDDGSQ AGEKKRRLSV EQVKTLEKNF ELGNKLEPER KMQLARSLGL 120 QPRQIAIWFQ NRRARWKTKQ LEIDYDLLKR QFDAVKAENN ALQTQNQKLH AEILALKNKE 180 PTESINLNKE TEGSCSFRSE NSSDVKLDIA RTPAIDSPLP NHHPLSRTFF PSSSTRPAGA 240 AQLFQTSSSR PDFRCQKMDQ MVKEESLTNM FCSIEDQSGF WPWLEQQQFN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0200s0040.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462327.1	0.0	homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-121	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	B9HJT5	0.0	B9HJT5_POPTR; Uncharacterized protein
STRING	POPTR_0008s14770.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-123	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0200s0040.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]