PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0200s0410.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 735aa    MW: 80847.7 Da    PI: 5.3382
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0200s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07128150427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             ++C ff++ G C  Gd+C F+Hgp
  SapurV1A.0200s0410.1.p 128 VPCIFFQQ-GMCVKGDKCAFSHGP 150
                             69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8033362IPR000571Zinc finger, CCCH-type
SMARTSM003560.00183461IPR000571Zinc finger, CCCH-type
PfamPF156632.3E-113488No hitNo description
PROSITE profilePS5010310.4086490IPR000571Zinc finger, CCCH-type
SMARTSM003560.166689IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-5124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671124151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6125149IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4128150IPR000571Zinc finger, CCCH-type
PfamPF146080.0029129149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MVAATQPQQH PSAAADSTTT ANASVTSVED EALKRNTDCV YFLASPLTCK KGSECEYRHS  60
EYARVNPRDC YFWLNGNCLN TKCGFRHPPL DGLFGTQATA SSGSSLPPSH AAVTPASHAS  120
HNPGKQAVPC IFFQQGMCVK GDKCAFSHGP NLAGNKVSQP KAPTPGAEAL TPKKAFGGLQ  180
KCTQEHKIPQ TKISKVVEAP SAAKPVSRAE IVHSRNSAGD VRSAVPPKSM DGEIPTYKAG  240
NLPLMVNGNL TRSSRLHQSQ VVDDHVIQNG KDADEYLRES SPGFDVLVDN ELRDSDYYQG  300
EEQLGRTTEN EGRNLNSVDE FDTGHSADYG LLPDDREMYL DPRGYVSYEL TPGQHAWEQH  360
RVSSERMLMA QAHPERRGYS KADSPEHTVE SDLRYRLMKQ RRGNGLRSVV SNDFVPENHV  420
DERGYRGSSQ RDSHHLPSHE SSISSRLRGR IKLPGRSTNN GGDVRSEREI DRGRNRGRLS  480
PVSSPVPSQQ GRLWDRMKAR VEEDYNEGRS FRGSQVRREL MDDESTDFAG PKRLAELKGG  540
KSSEGKLQHS LGKRKYSEDN PSSDADLSFE GPMPLSEILK RKREGGAAAS GSGISPVIKD  600
NKESKQSLII NSNKKAELQG GISSVSKDDN SSQMLKNKEP KFASDGAIGT EEENIEIAHG  660
QSSQLPIPSE NETEDVIIAD DGMEDHEYEG NYEYEQVDEG EYNYEEGENI DGEEEYEDEE  720
DGEDFAKKIG VVIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0200s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002312505.30.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A2K1ZH600.0A0A2K1ZH60_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137